Evidence map›Paper›PMID 40069618›Full record

ArticleBMC genomics2025

Transcriptional profiles reveal physiological mechanisms for compensation during a simulated marine heatwave in Yellowtail Kingfish (Seriola lalandi).

Sharon E Hook, Ryan J Farr, Jenny Su, Alistair J Hobday, Catherine Wingate, Lindsey Woolley, Luke Pilmer

Abstract read
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sharon E HookCSIRO Environment, Hobart, TAS, Australia. Sharon.Hook@csiro.au.
Ryan J FarrCSIRO Health and Biosecurity, Geelong, VIC, Australia.
Jenny SuCSIRO Health and Biosecurity, Geelong, VIC, Australia.
Alistair J HobdayCSIRO Environment, Hobart, TAS, Australia.
Catherine WingateDPIRD Marine Fish, Aquaculture Research and Development, Fremantle, WA, Australia.
Lindsey WoolleyDPIRD Marine Fish, Aquaculture Research and Development, Fremantle, WA, Australia.
Luke PilmerDPIRD Marine Fish, Aquaculture Research and Development, Fremantle, WA, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundChanging ocean temperatures are already causing declines in populations of marine organisms. Predicting the capacity of organisms to adjust to the pressures posed by climate change is a topic of much current research effort, particularly for species we farm or harvest. To explore one measure of phenotypic plasticity, the physiological compensations in response to heat stress as might be experienced in a marine heatwave, we exposed Yellowtail Kingfish (Seriola lalandi) to sublethal heat stress, and used the transcriptome in gill and muscle, benchmarked against heat shock proteins and oxidative stress indicators, to characterise the acute heat stress response (6 h after the initiation of stress), and the physiological compensation to that response (24 and 72 h after the initiation of stress).

resultsThe heat stress experiments induced elevations in heat shock proteins, as measured in blood, demonstrating the sublethal stress level. The initial response (6 h) to heat stress included the expected cellular stress response. Exposure of 24 h or more led to altered transcriptomic patterns for protein degradation, membrane transporters, and primary metabolism. In the muscle, numerous transcripts with mitochondrial function had altered abundance. There was a profound change to the regulation of transcription, as well as numerous transcripts with differential exon usage, suggesting that this may be a mechanism for conferring physiological resilience to heat stress.

conclusionsThese results demonstrate the processes involved in acclimation to heat stress in this species, and the utility of using the transcriptome to assess plasticity. It also showed that differential exon usage may be an important mechanism for conferring plasticity. Future work should investigate the role of genome regulation, and alternative splicing in particular, on conferring resilience to temperature changes.

Indexed as

Gene Expression ProfilingHeat-Shock ResponsePerciformesTranscriptomeAnimalsClimate ChangeFish ProteinsGillsHeat-Shock ProteinsHot TemperatureFish ProteinsHeat-Shock ProteinsAlternative splicingClimate changeMarine heatwavesPhenotypic plasticityStress response

Identifiers

PMID40069618
PMCPMC11895300

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.