Evidence map›Paper›PMID 40069569›Full record

ArticlePhysiologia plantarum

Differential gene expression and metabolic pathways in Toona sinensis: Influence on colour and aroma.

Rui Zeng, Mingmin Zheng, Yunhong Gao, Jianchun Hu, Javed Ahmad, Muhammad Umer Farooq, Songqing Liu, Xiangmei Lin, Suleyman I Allakhverdiev, Sergey Shabala

Abstract read
In one paragraph

Article in Physiologia plantarum. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Rui ZengCollege of Chemistry and Life Science, Chengdu Normal University, Chengdu, Sichuan, China.
Mingmin ZhengCollege of Chemistry and Life Science, Chengdu Normal University, Chengdu, Sichuan, China.
Yunhong GaoSichuan Yizhong Agricultural Development Co., Ltd, Chengdu, China.
Jianchun HuXichang University, Xichang, China.
Javed AhmadWheat Research Institute, Ayub Agricultural Research Institute Faisalabad, Punjab, Pakistan.
Muhammad Umer FarooqWheat Research Institute, Ayub Agricultural Research Institute Faisalabad, Punjab, Pakistan.
Songqing LiuCollege of Chemistry and Life Science, Chengdu Normal University, Chengdu, Sichuan, China.
Xiangmei LinCollege of Chemistry and Life Science, Chengdu Normal University, Chengdu, Sichuan, China.
Suleyman I AllakhverdievK.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Moscow, Russia.ORCID https://orcid.org/0000-0002-0452-232X
Sergey ShabalaSchool of Biological Science, University of Western Australia, Crawley, Australia.ORCID https://orcid.org/0000-0003-2345-8981

Funding

Chengdu Normal University 2023JG19Chengdu Normal University YJRC2021-03
6 · The paper itself

Abstract

Toona sinensis, a plant species renowned for its culinary and medicinal properties, exhibits diverse colour variations that contribute to its aesthetic appeal and commercial value. Understanding the molecular mechanisms underlying colour and aroma traits in Toona sinensis is crucial for breeding programs and quality regulation in agriculture and the food industry. The present investigation included a comprehensive analysis of the transcriptomic and metabolomic profiles of Toona sinensis with different colours, including green, red, and red leaves with green stems. Metabolic analysis revealed that the flavonoid biosynthesis pathway governs the colour distinction between green and red Toona sinensis. The top 10 metabolites influenced by transcriptome include terpenoids (5), heterocyclic compounds (1), phenol (1), ketone (1), aldehyde (1), and alcohol (1). Fifteen highly expressed genes impacted by phenylpropanoid, sesquiterpenoid, and triterpenoid biosynthesis in coloured Toona sinensis. Functional annotation and pathway analysis revealed that terpene metabolites are predominantly synthesized via terpene metabolic pathway, involving eight key gene families. This study underscores the importance of multi-omics approaches in unravelling the genetic and metabolic basis of phenotypic traits in plant species aimed at improving colour, aroma, and nutritional quality in plants and derived products. HIGHLIGHTS: Flavonoid biosynthesis pathway governs the colour distinction between green and red Toona sinensis. The top 10 metabolites influenced by transcriptome include five terpenoids, one heterocyclic compound, one phenol, one ketone, one aldehyde, and one alcohol. Fifteen highly expressed genes impacted by phenylpropanoid, sesquiterpenoid, and triterpenoid biosynthesis in coloured Toona sinensis. Terpene metabolites are predominantly synthesized via the terpene metabolic pathway, involving eight key gene families. The net photosynthetic rate and intercellular CO

Indexed as

Metabolic Networks and PathwaysColorFlavonoidsGene Expression ProfilingGene Expression Regulation, PlantOdorantsPlant LeavesTerpenesTranscriptomeFlavonoidsTerpenes

Identifiers

PMID40069569
PMCPMC11896931

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.