Evidence map›Paper›PMID 40069213›Full record

ArticleScientific data2025

An Evaluation Benchmark for Adverse Drug Event Prediction from Clinical Trial Results.

Anthony Yazdani, Alban Bornet, Philipp Khlebnikov, Boya Zhang, Hossein Rouhizadeh, Poorya Amini, Douglas Teodoro

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Anthony YazdaniDepartment of Radiology and Medical Informatics, Faculty of Medicine, University of Geneva, Geneva, Switzerland. anthony.yazdani@unige.ch.ORCID http://orcid.org/0000-0003-3309-6128
Alban BornetDepartment of Radiology and Medical Informatics, Faculty of Medicine, University of Geneva, Geneva, Switzerland.ORCID http://orcid.org/0000-0002-7266-627X
Philipp KhlebnikovRisklick AG, Bern, Switzerland.
Boya ZhangDepartment of Radiology and Medical Informatics, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Hossein RouhizadehDepartment of Radiology and Medical Informatics, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Poorya AminiRisklick AG, Bern, Switzerland.
Douglas TeodoroDepartment of Radiology and Medical Informatics, Faculty of Medicine, University of Geneva, Geneva, Switzerland. douglas.teodoro@unige.ch.ORCID http://orcid.org/0000-0001-6238-4503

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adverse drug events (ADEs) are a major safety issue in clinical trials. Thus, predicting ADEs is key to developing safer medications and enhancing patient outcomes. To support this effort, we introduce CT-ADE, a dataset for multilabel ADE prediction in monopharmacy treatments. CT-ADE encompasses 2,497 drugs and 168,984 drug-ADE pairs from clinical trial results, annotated using the MedDRA ontology. Unlike existing resources, CT-ADE integrates treatment and target population data, enabling comparative analyses under varying conditions, such as dosage, administration route, and demographics. In addition, CT-ADE systematically collects all ADEs in the study population, including positive and negative cases. To provide a baseline for ADE prediction performance using the CT-ADE dataset, we conducted analyses using large language models (LLMs). The best LLM achieved an F1-score of 56%, with models incorporating treatment and patient information outperforming by 21%-38% those relying solely on the chemical structure. These findings underscore the importance of contextual information in ADE prediction and establish CT-ADE as a robust resource for safety risk assessment in pharmaceutical research and development.

Indexed as

Clinical Trials as TopicDrug-Related Side Effects and Adverse ReactionsBenchmarkingHumans

Identifiers

PMID40069213
PMCPMC11897206

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.