Evidence map›Paper›PMID 40069159›Full record

ArticleScientific data2025

Chromosome-level genome assembly of the clam, Xishi tongue Coelomactra antiquata.

Yawen Shen, Yanlin Wang, Lingfeng Kong

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yawen ShenKey Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao, 266003, China.
Yanlin WangKey Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao, 266003, China.
Lingfeng KongKey Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao, 266003, China. klfaly@ouc.edu.cn.

Funding

Department of Science and Technology of Shandong Province 2022TZXD002Department of Science and Technology of Shandong Province 23-2-1-166-zyyd-jchQingdao Municipal Science and Technology Bureau ZR2023MD008
6 · The paper itself

Abstract

Xishi tongue (Coelomactra antiquata), a commercially valuable marine bivalve, is distributed along the coastal waters of East Asia. In China, significant morphological and genetic differences have been observed between northern and southern populations. Overfishing and pollution have caused a severe decline in its natural populations, rendering the species endangered. In this study, we constructed the first chromosome-level genome of C. antiquata based on PacBio HiFi and Hi-C sequencing data. The assembled genome was 791.83 Mb in size, with the scaffold N50 of 44.05 Mb, and 99.79% of the sequences (790.13 Mb) were anchored to 19 chromosomes. A total of 24,592 protein-coding genes were predicted in the final assembly, of which 89.88% were functionally annotated. The BUSCO analysis revealed a genome completeness of 97.69%. The high-quality genome serves as a critical resource for advancing research on population genetics and germplasm conservation of this commercial shellfish, thereby facilitating sustainable management and conservation efforts.

Indexed as

BivalviaChromosomesGenomeAnimalsChina

Identifiers

PMID40069159
PMCPMC11897284

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.