Evidence map›Paper›PMID 40069140›Full record

ArticleNature communications2025

A data-driven generative strategy to avoid reward hacking in multi-objective molecular design.

Tatsuya Yoshizawa, Shoichi Ishida, Tomohiro Sato, Masateru Ohta, Teruki Honma, Kei Terayama

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
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  11. Generative Deep Learning for de Novo Drug Design─A Chemical Space Odyssey.Journal of chemical information and modeling · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tatsuya YoshizawaGraduate School of Medical Life Science, Yokohama City University, 1-7-29, Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Kanagawa, Japan.ORCID http://orcid.org/0000-0002-5074-6383
Shoichi IshidaGraduate School of Medical Life Science, Yokohama City University, 1-7-29, Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Kanagawa, Japan.ORCID http://orcid.org/0000-0002-5638-3579
Tomohiro SatoRIKEN Center for Biosystems Dynamics Research, 1-7-22, Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Kanagawa, Japan.ORCID http://orcid.org/0000-0002-0660-5559
Masateru OhtaHPC- and AI-driven Drug Development Platform Division, RIKEN Center for Computational Science, 1-7-22, Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Kanagawa, Japan.
Teruki HonmaRIKEN Center for Biosystems Dynamics Research, 1-7-22, Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Kanagawa, Japan.
Kei TerayamaGraduate School of Medical Life Science, Yokohama City University, 1-7-29, Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Kanagawa, Japan. terayama@yokohama-cu.ac.jp.ORCID http://orcid.org/0000-0003-3914-248X

Funding

Japan Agency for Medical Research and Development (AMED) JP23nk0101111MEXT | Japan Science and Technology Agency (JST) JPMJFR232UMinistry of Education, Culture, Sports, Science and Technology (MEXT) JPMXP1020230120Ministry of Education, Culture, Sports, Science and Technology (MEXT) JPMXP1122683430
6 · The paper itself

Abstract

Molecular design using data-driven generative models has emerged as a promising technology, impacting various fields such as drug discovery and the development of functional materials. However, this approach is often susceptible to optimization failure due to reward hacking, where prediction models fail to extrapolate, i.e., fail to accurately predict properties for designed molecules that considerably deviate from the training data. While methods for estimating prediction reliability, such as the applicability domain (AD), have been used for mitigating reward hacking, multi-objective optimization makes it challenging. The difficulty arises from the need to determine in advance whether the multiple ADs with some reliability levels overlap in chemical space, and to appropriately adjust the reliability levels for each property prediction. Herein, we propose a reliable design framework to perform multi-objective optimization using generative models while preventing reward hacking. To demonstrate the effectiveness of the proposed framework, we designed candidates for anticancer drugs as a typical example of multi-objective optimization. We successfully designed molecules with high predicted values and reliabilities, including an approved drug. In addition, the reliability levels can be automatically adjusted according to the property prioritization specified by the user without any detailed settings.

Identifiers

PMID40069140
PMCPMC11897179

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.