Evidence map›Paper›PMID 40068815›Full record

ArticleOpen biology2025

Simple, streamlined, cost-effective cDNA synthesis method from cell cultures.

Daniel Stránský, Monika Šteigerová, Markéta Kuklová, Veronika Hanzíková, Nikolina Canová, Jiří Novotný, Ladislav Šenolt, Ondřej Slanař

Abstract read
In one paragraph

Article in Open biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Daniel StránskýDepartment of Pharmacology, First Faculty of Medicine, Charles University, Praha, Czech Republic.ORCID 0009-0000-8721-5060
Monika ŠteigerováDepartment of Pharmacology, First Faculty of Medicine, Charles University, Praha, Czech Republic.
Markéta KuklováDepartment of Rheumatology, Institute of Rheumatology, Praha, Czech Republic.
Veronika HanzíkováFaculty Transfusion Center, General University Hospital, Praha, Czech Republic.
Nikolina CanováDepartment of Pharmacology, First Faculty of Medicine, Charles University, Praha, Czech Republic.ORCID 0000-0002-6701-4672
Jiří NovotnýDepartment of Physiology, Faculty of Science, Charles University, Praha, Czech Republic.
Ladislav ŠenoltDepartment of Rheumatology, Institute of Rheumatology, Praha, Czech Republic.
Ondřej SlanařDepartment of Pharmacology, First Faculty of Medicine, Charles University, Praha, Czech Republic.ORCID 0000-0002-5357-7562

Funding

GAUKMinistry of Health of Czech Republic
6 · The paper itself

Abstract

Applications like drug development need simple and streamlined methods to process samples from 96-well cell culture plates for gene expression measurements. Unfortunately, current options are expensive for such processing. Therefore, our aim was to develop a method that would allow streamlined analysis of mRNA from 96-well cell culture plates while being relatively cheap and simple. We developed a method based on the qPCR 'Cells-to-cDNA' approach and validated it against commercially available kits using the same approach or spin columns-based RNA purification. For this purpose, we conducted a series of comparisons of gene expression from peripheral blood mononuclear cells, SK-HEP-1 and U-87 cell cultures in 96-well plates. Our final method involved lysing cells with 25-100 µl solution of 0.5% SDS, 10 mM DTT, 1 mg ml

Indexed as

Cell Culture TechniquesDNA, ComplementaryCost-Benefit AnalysisGene Expression ProfilingHumansLeukocytes, MononuclearReal-Time Polymerase Chain ReactionRNA, MessengerDNA, ComplementaryRNA, Messengercell lysisin vitromRNAperipheral blood mononuclear cellsproteinase kqPCRRNA isolation

Identifiers

PMID40068815
PMCPMC11896693

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.