Evidence map›Paper›PMID 40065732›Full record

ArticleJournal of chemical theory and computation2025

Efficient Training of Neural Network Potentials for Chemical and Enzymatic Reactions by Continual Learning.

Yao-Kun Lei, Kiyoshi Yagi, Yuji Sugita

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yao-Kun LeiTheoretical Molecular Science Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama 351-0198, Japan.
Kiyoshi YagiTheoretical Molecular Science Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama 351-0198, Japan.ORCID 0000-0003-1120-9355
Yuji SugitaTheoretical Molecular Science Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama 351-0198, Japan.ORCID 0000-0001-9738-9216

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Machine learning (ML) methods have emerged as an efficient surrogate for high-level electronic structure theory, offering precision and computational efficiency. However, the vast conformational and chemical space remains challenging when constructing a general force field. Training data sets typically cover only a limited region of this space, resulting in poor extrapolation performance. Traditional strategies must address this problem by training models from scratch using old and new data sets. In addition, model transferability is crucial for general force field construction. Existing ML force fields, designed for closed systems with no external environmental potential, exhibit limited transferability to complex condensed phase systems such as enzymatic reactions, resulting in inferior performance and high memory costs. Our ML/MM model, based on the Taylor expansion of the electrostatic operator, showed high transferability between reactions in several simple solvents. This work extends the strategy to enzymatic reactions to explore the transferability between more complex heterogeneous environments. In addition, we also apply continual learning strategies based on memory data sets to enable autonomous and on-the-fly training on a continuous stream of new data. By combining these two methods, we can efficiently construct a force field that can be applied to chemical reactions in various environmental media.

Identifiers

PMID40065732
PMCPMC11912204

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.