Evidence map›Paper›PMID 40065170›Full record

ArticleNature medicine2025

LILRB3 genetic variation is associated with kidney transplant failure in African American recipients.

Zeguo Sun, Zhengzi Yi, Chengguo Wei, Wenlin Wang, Tianyuan Ren, Paolo Cravedi, Fasika Tedla, Stephen C Ward, Evren Azeloglu, Daniel R Schrider and 38 more

Erratum issuedAbstract read
In one paragraph

Article in Nature medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Sensitization in Transplantation Assessment of Risk 2025 innate working group: The potential role of innate allorecognition in kidney allograft damage.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2025
    Review
  5. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

48 authors.

Zeguo Sun *Renal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Zhengzi Yi *Renal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Chengguo Wei *Renal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0002-7940-8310
Wenlin WangRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Tianyuan RenSuzhou Institute of Systems Medicine, Chinese Academy of Medical Sciences, Suzhou, China.
Paolo CravediRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0001-7837-0923
Fasika TedlaThe Recanati/Miller Transplantation Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0003-2695-9570
Stephen C WardDepartment of Pathology and Laboratory Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Evren AzelogluRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0001-6137-109X
Daniel R SchriderDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0001-5249-4151
Yun LiDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0002-9275-4189
Atlas KhanDivision of Nephrology, Department of Medicine, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-6651-2725
Francesca ZanoniDivision of Nephrology, Department of Medicine, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0001-9567-6713
Jia FuRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0002-8280-3813
Sumaria AliCenter for Immunotherapy Research, Houston Methodist Neal Cancer Center and Houston Methodist Research Institute, Houston, TX, USA.
Shun LiuDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Deguang LiangCell Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Tong LiuCenter for Advanced Proteomics Research and Department of Microbiology, Biochemistry and Molecular Genetics, Rutgers University, Newark, NJ, USA.
Hong LiCenter for Advanced Proteomics Research and Department of Microbiology, Biochemistry and Molecular Genetics, Rutgers University, Newark, NJ, USA.ORCID http://orcid.org/0000-0001-5731-5335
Caixia XiRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Thi Ha VyRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Gohar MosoyanRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Quan SunDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0001-8324-2803
Ashwani KumarDepartment of Medicine, Yale University, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-0086-7398
Zhongyang ZhangDepartment of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0002-2521-3884
Samira FaroukRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Kirk CampellRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Jordi OchandoDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0001-7037-1681
Kyung LeeRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0002-9756-1765
Steve CocaRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Jenny XiangDepartment of Microbiology and Immunology, Weil Cornell Medicine, New York, NY, USA.
Patricia ConnollyVericiDx Inc., Franklin, TN, USA.
Lorenzo GallonDepartment of Medicine, University of Illinois Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-6094-1027
Philip J O'ConnellCentre for Transplant and Renal Research, Westmead Institute for Medical Research, University of Sydney, Sydney, New South Wales, Australia.
Robert ColvinDepartment of Pathology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-4493-4150
Madhav C MenonDepartment of Medicine, Yale University, New Haven, CT, USA.
Girish NadkarniRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0001-6319-4314
John C HeRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0002-1502-2849
Monica KraftDepartment of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Xuejun JiangCell Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Xuewu ZhangDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0002-3634-6711
Krzysztof KirylukDivision of Nephrology, Department of Medicine, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-5047-6715
Aravind CherukuriDepartments of Surgery, Immunology and Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0002-8649-2901
Fadi G LakkisDepartments of Surgery, Immunology and Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Weiguo ZhangSuzhou Institute of Systems Medicine, Chinese Academy of Medical Sciences, Suzhou, China.
Shu-Hsia ChenCenter for Immunotherapy Research, Houston Methodist Neal Cancer Center and Houston Methodist Research Institute, Houston, TX, USA.
Peter S HeegerDepartment of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
Weijia ZhangRenal Division, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA. weijia.zhang@mssm.edu.ORCID http://orcid.org/0009-0005-0151-4200

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Conduits: Mount Sinai Health System Translational Science HubUL1TR004419 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Rosalind J Wright · 2022 to 2026
$46.4M
Rutgers Mass Spectrometry Core for Integrative Neuroscience ResearchP30NS046593 · NINDS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI LOBEL, PETER · 2004 to 2018
$9.9M
Genomics of Chronic Renal Allograft RejectionU01AI070107 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MURPHY, BARBARA T. · 2006 to 2012
$9.4M
Shared Resources Core: Ferroptosis Biomarkers and Lipidomic AnalysisP01CA291697 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Xuejun Jiang · 2025 to 2026
$7.4M
Innate Recognition of Allogeneic Non-SelfR01AI099465 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LAKKIS, FADI G. · 2012 to 2022
$4.1M
Transmembrane signaling mechanisms of plexin - SupplementR35GM130289 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Xuewu Zhang · 2019 to 2026
$3.6M
Innate Allorecognition in Clinical Organ TransplantationR01AI172973 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Fadi G. Lakkis · 2023 to 2026
$2.8M
Dichotomous roles of Shroom3 in Tubular cells and Podocytes in native and allograft kidneysR01DK122164 · NIDDK · YALE UNIVERSITY · PI Madhav C Menon · 2019 to 2026
$2.7M
Role of AMP-kinase pathway in the regulation of Minimal change disease-to-FSGS transitionR01DK132274 · NIDDK · YALE UNIVERSITY · PI Madhav C Menon · 2023 to 2026
$2.1M
Orbitrap Fusion Lumos Tribrid MS System for Proteomics Research at Rutgers Newark CampusS10OD025047 · OD · RBHS-NEW JERSEY MEDICAL SCHOOL · PI LI, HONG · 2018 to 2018
$1.1M
Modelling mechanisms of progressive chronic kidney disease in APOL1 high-risk live-donors using BAC-Transgenic miceR21AI178705 · NIAID · YALE UNIVERSITY · PI ISHIBE, SHUTA, MENON, MADHAV C · 2023 to 2024
$461k
NCATS NIH HHS UL1 TR004419NCI NIH HHS P01 CA291697NCI NIH HHS P30 CA008748NIAID NIH HHS R01 AI099465NIAID NIH HHS R01 AI172973NIAID NIH HHS R21 AI178705NIAID NIH HHS U01 AI070107NIDDK NIH HHS R01 DK122164NIDDK NIH HHS R01 DK132274NIGMS NIH HHS R35 GM130289NIH HHS S10 OD025047NINDS NIH HHS P30 NS046593
6 · The paper itself

Abstract

African American (AA) kidney transplant recipients exhibit a higher rate of graft loss compared with other racial and ethnic populations, highlighting the need to identify causative factors. Here, in the Genomics of Chronic Allograft Rejection cohort, pretransplant blood RNA sequencing revealed a cluster of four consecutive missense single-nucelotide polymorphisms (SNPs), within the leukocyte immunoglobulin-like receptor B3 (LILRB3) gene, strongly associated with death-censored graft loss. This SNP cluster (named LILRB3-4SNPs) encodes missense mutations at amino acids 617-618 proximal to a SHP1/2 phosphatase-binding immunoreceptor tyrosine-based inhibitory motif. The LILRB3-4SNPs cluster is specifically enriched within AA individuals and exhibited a strong association with death-censored graft loss and estimated glomerular filtration rate decline in the AA participants from multiple transplant cohorts. In two large Biobanks (BioMe and All-of-Us), the LILRB3-4SNPs cluster was associated with the early onset of end-stage renal disease and acted synergistically with the apolipoprotein L1 (APOL1) G1/G2 allele to accelerate disease progression. The SNPs were also linked to multiple immune-related diseases in AA individuals. Last, on multiomics analysis of blood and biopsies, recipients with LILRB3-4SNPs showed enhanced inflammation and monocyte ferroptosis. While larger and prospective studies are needed, our data provide insights on the genetic variation underlying kidney transplant outcomes.

Indexed as

Black or African AmericanGraft RejectionKidney Failure, ChronicKidney TransplantationReceptors, ImmunologicAdultApolipoprotein L1FemaleHumansMaleMiddle AgedMutation, MissensePolymorphism, Single NucleotideTransplant RecipientsUnited StatesAPOL1 protein, humanApolipoprotein L1Receptors, Immunologic

Identifiers

PMID40065170
PMCPMC12527113

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