Evidence map›Paper›PMID 40063791›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Quantifying compositional variability in microbial communities with FAVA.

Maike L Morrison, Katherine S Xue, Noah A Rosenberg

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Maike L MorrisonDepartment of Biology, Stanford University, Stanford, CA 94305.ORCID 0000-0003-0430-1401
Katherine S XueDepartment of Biology, Stanford University, Stanford, CA 94305.ORCID 0000-0002-4094-3615
Noah A RosenbergDepartment of Biology, Stanford University, Stanford, CA 94305.ORCID 0000-0002-1829-8664

Funding

Population genetics for large-scale sequencing studies of diverse populationsR01HG005855 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Noah Rosenberg, Paul A Scheet · 2010 to 2026
$5.8M
Household transmission of the human gut microbiota after antibiotic exposureR21AI168860 · NIAID · STANFORD UNIVERSITY · PI RELMAN, DAVID A. · 2023 to 2024
$426k
HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R21-AI168860NHGRI NIH HHS R01 HG005855NIAID NIH HHS R21 AI168860
6 · The paper itself

Abstract

Microbial communities vary across space, time, and individual hosts, generating a need for statistical methods capable of quantifying variability across multiple microbiome samples at once. To understand heterogeneity across microbiome samples from different host individuals, sampling times, spatial locations, or experimental replicates, we present FAVA (

Indexed as

Gastrointestinal MicrobiomeMicrobiotaAnimalsPhylogenyRuminantscompositional variabilityFSTmicrobial communitiesmicrobiomespopulation genetics

Identifiers

PMID40063791
PMCPMC11929398

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.