Evidence map›Paper›PMID 40060873›Full record

ArticleACS omega2025

Oligomerization Function of the Native Exon 5 Sequence of Ameloblastin Fused with Calmodulin.

Monika Zouharova, Petr Herman, Lucie Bednarova, Veronika Vetyskova, Romana Hadravova, Klara Postulkova, Lucie Zemanova, Jiri Vondrasek, Kristyna Vydra Bousova

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Article in ACS omega, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Monika ZouharovaInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo namesti 5/542, 16000 Prague, Czech Republic.ORCID https://orcid.org/0000-0002-2254-6480
Petr HermanFaculty of Mathematics and Physics, Charles University, Ke Kralovu 5, 12116 Prague, Czech Republic.
Lucie BednarovaInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo namesti 5/542, 16000 Prague, Czech Republic.
Veronika VetyskovaInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo namesti 5/542, 16000 Prague, Czech Republic.
Romana HadravovaInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo namesti 5/542, 16000 Prague, Czech Republic.
Klara PostulkovaInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo namesti 5/542, 16000 Prague, Czech Republic.
Lucie ZemanovaFaculty of Science, University of Hradec Kralove, Rokitanskeho 62, 500 03 Hradec Kralove, Czech Republic.ORCID https://orcid.org/0000-0002-2732-5935
Jiri VondrasekInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo namesti 5/542, 16000 Prague, Czech Republic.ORCID https://orcid.org/0000-0002-6066-973X
Kristyna Vydra BousovaInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo namesti 5/542, 16000 Prague, Czech Republic.ORCID https://orcid.org/0000-0001-9030-3811

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The evolution of proteins is primarily driven by the combinatorial assembly of a limited set of pre-existing modules known as protein domains. This modular architecture not only supports the diversity of natural proteins but also provides a robust strategy for protein engineering, enabling the design of artificial proteins with enhanced or novel functions for various industrial applications. Among these functions, oligomerization plays a crucial role in enhancing protein activity, such as by increasing the binding capacity of antibodies. To investigate the potential of engineering oligomerization, we examined the transferability of the sequence domain encoded by exon 5 (Ex5), which was originally responsible for the oligomerization of ameloblastin (AMBN). We designed a two-domain protein composed of Ex5 in combination with a monomeric, globular, and highly stable protein, specifically calmodulin (CaM). CaM represents the opposite protein character to AMBN, which is highly disordered and has a dynamic character. This engineered protein, termed eCaM, successfully acquired an oligomeric function, inducing self-assembly under specific conditions. Biochemical and biophysical analyses revealed that the oligomerization of eCaM is both concentration- and time-dependent, with the process being reversible upon dilution. Furthermore, mutating a key oligomerization residue within Ex5 abolished the self-assembly of eCaM, confirming the essential role of the Ex5 motif in driving oligomerization. Our findings demonstrate that the oligomerization properties encoded by Ex5 can be effectively transferred to a new protein context, though the positioning of Ex5 within the protein structure is critical. This work highlights the potential of enhancing monomeric proteins with oligomeric functions, paving the way for industrial applications and the development of proteins with tailored properties.

Identifiers

PMID40060873
PMCPMC11886713

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.