Evidence map›Paper›PMID 40060572›Full record

ArticlebioRxiv : the preprint server for biology2025

Mutant IDH impairs chromatin binding by PDGFB to promote chromosome instability.

Rachel N Curry, Malcolm F McDonald, Peihao He, Brittney Lozzi, Yeunjung Ko, Isabella O'Reilly, Anna Rosenbaum, Wookbong Kwon, Leyla Fahim, Joshua Marcus and 13 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Rachel N CurryDepartment of Pediatrics, Baylor College of Medicine, Houston, TX.
Malcolm F McDonaldCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX.
Peihao HeCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX.
Brittney LozziCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX.
Yeunjung KoProgram in Immunology and Microbiology, Baylor College of Medicine, Houston, TX, USA.
Isabella O'ReillyCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX.
Anna RosenbaumCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX.
Wookbong KwonCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX.
Leyla FahimDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX.
Joshua MarcusDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX.
Noah PowellDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX.
Su WangDepartment of Neurosurgery, Baylor College of Medicine, Houston, TX.
Jin MaCytogenetics and Cell Authentication Core, MD Anderson Cancer Center, Houston, TX.
Asha MultaniCytogenetics and Cell Authentication Core, MD Anderson Cancer Center, Houston, TX.
Dong-Joo ChoiCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX.
Debo SardarCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX.
Carrie MohilaDepartment of Neuropatholgy, Texas Children's Hospital, Houston, TX.
Jason LeeDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX.
Marco GalloPediatric Neuro-Oncology Research Program, Texas Children's Hospital, Houston, TX.ORCID 0000-0002-8451-8207
Arif HarmanciMcWilliams School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX.
Akdes Serin HarmanciProgram in Genetics and Genomics, Baylor College of Medicine, Houston, TX, USA.
Benjamin DeneenCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX.
Ganesh RaoDepartment of Neurosurgery, Baylor College of Medicine, Houston, TX.

Funding

Systematic Characterization and Targeting of Neomorphic Drivers in CancerU01CA281902 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Benjamin Deneen, Han Liang · 2023 to 2026
$3.5M
MOLECULAR DISSECTION OF SEIZURE MICROENVIRONMENT IN MALIGNANT GLIOMAR01CA223388 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DENEEN, BENJAMIN, NOEBELS, JEFFREY · 2018 to 2022
$3.5M
Astrocyte Transcriptional Dependencies in Brain CircuitsR35NS132230 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI Benjamin Deneen · 2023 to 2026
$3.5M
MODELING MALIGNANT PROGRESSION IN GLIOMAR01NS094615 · NINDS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI RAO, GANESH · 2016 to 2020
$1.8M
Cellular and Molecular Mechanisms of GBM InfiltrationR01NS124093 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI Benjamin Deneen, Ganesh Rao · 2022 to 2026
$1.6M
Decoding hyperexcitability in malignant gliomaK00CA274700 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Rachel Naomi Curry · 2024 to 2026
$249k
Acquisition of 10X Genomics Chromium Instrument to Accelerate Genomic and Single Cell Transcriptomic ResearchS10OD025240 · OD · BAYLOR COLLEGE OF MEDICINE · PI DODDAPANENI, HARSHA VARDHAN · 2018 to 2018
$125k
Decoding hyperexcitability in malignant gliomaF99CA274700 · NCI · BAYLOR COLLEGE OF MEDICINE · PI CURRY, RACHEL NAOMI · 2022 to 2023
$96k
NCI NIH HHS F99 CA274700NCI NIH HHS K00 CA274700NCI NIH HHS R01 CA223388NCI NIH HHS U01 CA281902NIH HHS S10 OD025240NINDS NIH HHS R01 NS094615NINDS NIH HHS R01 NS124093NINDS NIH HHS R35 NS132230
6 · The paper itself

Abstract

Non-canonical roles for growth factors in the nucleus have been previously described, but their mechanism of action and biological roles remain enigmatic. Platelet-derived growth factor B (PDGFB) can drive formation of low-grade glioma and here we show that it localizes to the nucleus of human glioma cells where it binds chromatin to preserve genome stability and cell lineage. Failure of PDGFB to localize to the nucleus leads to chromosomal abnormalities, aberrant heterochromatin architecture and accelerated tumorigenesis. Furthermore, nuclear localization of PDGFB is reliant upon the expression levels and mutation status of isocitrate dehydrogenase (IDH). Unexpectedly, we identified macrophages as the predominant source of PDGFB in human, finding that immune-derived PDGFB can localize to the nucleus of glioma cells. Collectively, these studies show that immune derived PDGFB enters the nucleus of glioma cells to maintain genomic stability, while identifying a new mechanism by which IDH mutations promote gliomagenesis.

Identifiers

PMID40060572
PMCPMC11888161

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.