Evidence map›Paper›PMID 40060443›Full record

ArticlebioRxiv : the preprint server for biology2025

A variational deep-learning approach to modeling memory T cell dynamics.

Christiaan H van Dorp, Joshua I Gray, Daniel H Paik, Donna L Farber, Andrew J Yates

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Christiaan H van DorpDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York City, USA.ORCID 0000-0002-7504-9947
Joshua I GrayDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York City, USA.ORCID 0000-0003-2796-5470
Daniel H PaikDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York City, USA.ORCID 0000-0002-6644-4742
Donna L FarberDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York City, USA.ORCID 0000-0001-8236-9183
Andrew J YatesDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York City, USA.ORCID 0000-0003-4606-4483

Funding

Modeling the development, structure and regulation of T cell memoryR01AI093870 · NIAID · UNIVERSITY OF GLASGOW · PI YATES, ANDREW · 2011 to 2025
$5.9M
Modeling the ecology of tissue-resident T cellsU01AI150680 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FARBER, DONNA L., YATES, ANDREW · 2020 to 2024
$5.0M
Five-laser Aurora spectral flow cytometerS10OD030282 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CREUSOT, REMI J · 2022 to 2022
$361k
NIAID NIH HHS R01 AI093870NIAID NIH HHS U01 AI150680NIH HHS S10 OD030282
6 · The paper itself

Abstract

Mechanistic models of dynamic, interacting cell populations have yielded many insights into the growth and resolution of immune responses. Historically these models have described the behavior of pre-defined cell types based on small numbers of phenotypic markers. The ubiquity of deep phenotyping therefore presents a new challenge; how do we confront tractable and interpretable mathematical models with high-dimensional data? To tackle this problem, we studied the development and persistence of lung-resident memory CD4 and CD8 T cells (T

Identifiers

PMID40060443
PMCPMC11888226

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.