Evidence map›Paper›PMID 40059439›Full record

Observational studyInternational endodontic journal2025

Bacterial genera in the fluids from apical periodontitis-related radicular cysts: An observational study.

David Szaraz, Jan Bohm, Sabina Cerulova, Lenka Bodokyova, Zdenek Danek, Ctirad Machacek, Petra Borilova Linhartova

Abstract readObservational Study
In one paragraph

Observational study in International endodontic journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

David SzarazClinic of Maxillofacial Surgery, University Hospital Brno, Brno, Czech Republic.
Jan BohmRECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.
Sabina CerulovaRECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.
Lenka BodokyovaRECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.
Zdenek DanekClinic of Maxillofacial Surgery, University Hospital Brno, Brno, Czech Republic.
Ctirad MachacekDepartment of Pathology, University Hospital Brno, Brno, Czech Republic.
Petra Borilova LinhartovaClinic of Maxillofacial Surgery, University Hospital Brno, Brno, Czech Republic.ORCID 0000-0003-0953-3615

Funding

Horizon 2020 Framework ProgrammeMinisterstvo Zdravotnictví Ceské Republiky NU20-08- 00205University Hospital Brno, Ministry of Health, Czech Republic - RVO 65269705
6 · The paper itself

Abstract

aimThis study aimed to evaluate bacteriome profiles (diversity, composition and relative abundances of bacterial genera) of the fluids from apical periodontitis (AP)-related radicular cysts (RCs). METHODOLOGY: This observational study included 29 patients with AP and RC with complete sample triplets (supragingival plaque, cryopulverized tooth and cystic fluid). The bacteriome profiles of each matrix as well as of negative controls (NCs) were examined using 16S rRNA amplicon sequencing.

resultsBacteriome profiles of cystic fluids differed from NCs in 79% of cases. The number of distinct amplicon sequence variants and Shannon index detected in cystic fluids and cryopulverized teeth were significantly lower than in paired supragingival plaque samples. Gram-negative genera and anaerobic genera were more abundant in cystic fluids than in paired cryopulverized teeth or their supragingival plaques. The relative abundances of the genera Prevotella_7/Prevotella, Fusobacterium and Porphyromonas were higher in cystic fluids than in paired cryopulverized teeth and NCs; their relative abundances dominated (>20%) in individual cystic fluids. Also, DNA from the genus Fretibacterium was significantly more commonly found in cryopulverized teeth and cystic fluids than in supragingival plaque samples. The relative abundances of this gram-negative bacterial genera in cryopulverized teeth differed from NCs; the difference from cystic fluids was borderline insignificant.

conclusionsAlthough the alpha-diversity in the cystic fluids is much lower compared to supragingival plaques, most cystic fluids are not sterile. DNA from specific anaerobic gram-negative bacterial genera dominated the fluids from AP-related RCs.

Indexed as

BacteriaPeriapical PeriodontitisRadicular CystAdultDental PlaqueFemaleHumansMaleMiddle AgedRNA, Ribosomal, 16SRNA, Ribosomal, 16S16S rRNA sequencingapical periodontitiscystic fluidmicrobiomeradicular cyst

Identifiers

PMID40059439
PMCPMC12065126

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.