Evidence map›Paper›PMID 40056420›Full record

ArticleJournal of clinical laboratory analysis2025

Analytical and Clinical Validation of Solo-Test Driver: A Targeted Amplicon-Based NGS Test-System for FFPE and cfDNA Analysis in Clinical Oncology Setting.

Maxim Ivanov, Alexandra Lebedeva, Ekaterina Belova, Tatiana Grigoreva, Egor Veselovsky, Alexandra Kavun, Anastasiia Taraskina, Olesya Kuznetsova, Vladislav Nikulin, Laima Belyaeva and 11 more

Abstract readValidation Study
In one paragraph

Article in Journal of clinical laboratory analysis, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

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0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

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5 · Who and what money

Authors and funding

21 authors.

Maxim IvanovOncoAtlas LLC, Moscow, Russia.ORCID https://orcid.org/0000-0002-9961-0129
Alexandra LebedevaOncoAtlas LLC, Moscow, Russia.
Ekaterina BelovaOncoAtlas LLC, Moscow, Russia.ORCID https://orcid.org/0000-0002-7701-8765
Tatiana GrigorevaOncoAtlas LLC, Moscow, Russia.
Egor VeselovskyOncoAtlas LLC, Moscow, Russia.
Alexandra KavunOncoAtlas LLC, Moscow, Russia.
Anastasiia TaraskinaOncoAtlas LLC, Moscow, Russia.
Olesya KuznetsovaOncoAtlas LLC, Moscow, Russia.
Vladislav NikulinFederal State Budgetary Institution N.N. Blokhin National Medical Research Center of Oncology, Moscow, Russian Federation.
Laima BelyaevaSechenov First Moscow State Medical University, Moscow, Russia.
Daria KravchukState Budgetary Institution of Health Care of the City of Moscow "Moscow Multidisciplinary Clinical Center" "Kommunarka" of the Department of Health of the City of Moscow, Moscow, Russia.
Tatyana LisitsaFederal State Budgetary Institution N.N. Blokhin National Medical Research Center of Oncology, Moscow, Russian Federation.
Alexey BarinovMoscow City Oncology Hospital No 62 of the Moscow Health Department, Istra, Russia.
Natalia PospekhovaFederal State Budgetary Institution N.N. Blokhin National Medical Research Center of Oncology, Moscow, Russian Federation.
Saida AliyarovaOncoAtlas LLC, Moscow, Russia.
Ekaterina KhomenkoOncoAtlas LLC, Moscow, Russia.
Alexey TryakinFederal State Budgetary Institution N.N. Blokhin National Medical Research Center of Oncology, Moscow, Russian Federation.
Irina DemidovaMoscow City Oncology Hospital No 62 of the Moscow Health Department, Istra, Russia.
Anna StroganovaFederal State Budgetary Institution N.N. Blokhin National Medical Research Center of Oncology, Moscow, Russian Federation.
Mikhail FedyaninFederal State Budgetary Institution N.N. Blokhin National Medical Research Center of Oncology, Moscow, Russian Federation.
Vladislav MileykoOncoAtlas LLC, Moscow, Russia.

Funding

Russian Science Foundation 22-75-10154
6 · The paper itself

Abstract

backgroundNext-generation sequencing (NGS) is increasingly integrated into cancer patient management, necessitating cost-effective, reliable tests for companion diagnostics. We present the validation of the Solo-test Driver panel, a custom NGS amplicon-based tool for DNA analysis of 34 oncogenes, addressing key clinical needs.

methodsThe panel's performance was validated for detecting SNVs, CNVs, and MSI. Analytical validation used 182 samples, while clinical validation involved 130 samples, both encompassing diverse tumor types and specimen formats.

resultsThe Solo-test Driver panel has the potential to identify an additional 18.3%, 16.5%, and 8.7% of RAS+ colorectal, PIK3CA+ breast, and EGFR+ lung cancer patients, respectively, when compared to FDA-approved PCR tests. Analytical validation demonstrated high intra-lab robustness (coefficient of variation of coverage uniformity 6.4%) and high inter-lab robustness (PCC of per-amplicon coverage 0.82, 0.84, 0.9 for three different labs). Estimated in silico sensitivity was 100% for detecting clinically actionable SNVs at 250x, corresponding to only 60,000 read pairs per sample. In vitro mixing experiments determined LoD starting from 3.3% VAF. Estimated in silico LoD ranged from 0.5% to 5% at 1000× (1% to 5% at 650x). Clinical validation demonstrated PPA/NPA of 100%/80%, 95%/100%, and 100%/100% for detecting MSI, SNVs, and CNVs, respectively.

conclusionsThe Solo-test Driver panel offers a reliable, cost-effective solution for detecting somatic alterations and genomic signatures, making it suitable for routine companion diagnostics in solid tumors.

Indexed as

Cell-Free Nucleic AcidsHigh-Throughput Nucleotide SequencingNeoplasmsDNA Copy Number VariationsHumansParaffin EmbeddingReproducibility of ResultsCell-Free Nucleic Acidsamplicon panelcfDNAcompanion diagnosticsFFPENGStumor molecular profiling

Identifiers

PMID40056420
PMCPMC11937170

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