Evidence map›Paper›PMID 40055516›Full record

ArticleCommunications biology2025

Cellular dsRNA interactome captured by K1 antibody reveals the regulatory map of exogenous RNA sensing.

JinA Lim, Namseok Lee, Seonmin Ju, Jeesoo Kim, Subin Mun, Moonhyeon Jeon, Yong-Ki Lee, Seok-Hoon Lee, Jayoung Ku, Sujin Kim and 3 more

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Nonsense-mediated decay controls a negative feedback loop in innate immune sensing.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Mutant p53 binds RNA to drive mitochondrial dysfunction.bioRxiv : the preprint server for biology · 2025
    Article
  4. Review
  5. RNA triggers chronic stress during neuronal aging.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

JinA Lim *Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea.ORCID http://orcid.org/0009-0003-8682-5061
Namseok Lee *Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea.ORCID http://orcid.org/0000-0002-3291-6561
Seonmin Ju *Center for RNA Research, Institute for Basic Science, Seoul, 08826, Republic of Korea.ORCID http://orcid.org/0009-0009-3140-4239
Jeesoo KimCenter for RNA Research, Institute for Basic Science, Seoul, 08826, Republic of Korea.
Subin MunDepartment of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea.ORCID http://orcid.org/0009-0006-0829-8966
Moonhyeon JeonDepartment of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea.ORCID http://orcid.org/0009-0006-9521-5670
Yong-Ki LeeDepartment of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea.ORCID http://orcid.org/0000-0001-5976-3043
Seok-Hoon LeeDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, 03080, Republic of Korea.ORCID http://orcid.org/0000-0002-7923-0030
Jayoung KuDepartment of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea.ORCID http://orcid.org/0000-0002-4112-4582
Sujin KimDepartment of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea.
Sangsu BaeDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, 03080, Republic of Korea.ORCID http://orcid.org/0000-0003-3615-8566
Jong-Seo KimCenter for RNA Research, Institute for Basic Science, Seoul, 08826, Republic of Korea. jongseokim@snu.ac.kr.ORCID http://orcid.org/0000-0002-8909-8440
Yoosik KimDepartment of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea. ysyoosik@kaist.ac.kr.ORCID http://orcid.org/0000-0003-3064-4643

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA-binding proteins (RBPs) provide a critical post-transcriptional regulatory layer in determining RNA fate. Currently, UV crosslinking followed by oligo-dT pull-down is the gold standard in identifying the RBP repertoire of poly-adenylated RNAs, but such method is ineffective in capturing RBPs that recognize double-stranded RNAs (dsRNAs). Here, we utilize anti-dsRNA K1 antibody immunoprecipitation followed by quantitative mass spectrometry to comprehensively identify RBPs bound to cellular dsRNAs without external stimulus. Notably, our dsRNA interactome contains proteins involved in sensing N

Indexed as

AntibodiesRNA-Binding ProteinsRNA, Double-StrandedHEK293 CellsHumansImmunoprecipitationInterferon-betaAntibodiesInterferon-betaRNA-Binding ProteinsRNA, Double-Stranded

Identifiers

PMID40055516
PMCPMC11889100

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.