Evidence map›Paper›PMID 40055511›Full record

ArticleScientific reports2025

Physics-informed machine learning for automatic model reduction in chemical reaction networks.

Joseph Pateras, Colin Zhang, Shriya Majumdar, Ayush Pal, Preetam Ghosh

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Joseph PaterasDepartment of Computer Science, Virginia Commonwealth University, Richmond, Virginia, 23284, USA.
Colin ZhangDepartment of Electrical Engineering and Computer Sciences, University of California, Berkeley, Berkeley, CA, 94720, USA.
Shriya MajumdarDepartment of Computer Science, University of Texas at Austin, Austin, TX, 78712, USA.
Ayush PalMills E. Godwin High School, Richmond, Virginia, 23238, USA.
Preetam GhoshDepartment of Computer Science, Virginia Commonwealth University, Richmond, Virginia, 23284, USA. pghosh@vcu.edu.

Funding

Commonwealth Health Research Board CHRB-236062National Institute on Alcohol Abuse and Alcoholism (NIAAA) 5R21AA029492-02National Science Foundation, United States NSF-475 231600NIMH NIH HHS 5R21MH128562-0
6 · The paper itself

Abstract

Physics-informed machine learning bridges the gap between the high fidelity of mechanistic models and the adaptive insights of artificial intelligence. In chemical reaction network modeling, this synergy proves valuable, addressing the high computational costs of detailed mechanistic models while leveraging the predictive power of machine learning. This study applies this fusion to the biomedical challenge of Aβ fibril aggregation, a key factor in Alzheimer's disease. Central to the research is the introduction of an automatic reaction order model reduction framework, designed to optimize reduced-order kinetic models. This framework represents a shift in model construction, automatically determining the appropriate level of detail for reaction network modeling. The proposed approach significantly improves simulation efficiency and accuracy, particularly in systems like Aβ aggregation, where precise modeling of nucleation and growth kinetics can reveal potential therapeutic targets. Additionally, the automatic model reduction technique has the potential to generalize to other network models. The methodology offers a scalable and adaptable tool for applications beyond biomedical research. Its ability to dynamically adjust model complexity based on system-specific needs ensures that models remain both computationally feasible and scientifically relevant, accommodating new data and evolving understandings of complex phenomena.

Indexed as

Amyloid beta-PeptidesMachine LearningModels, ChemicalAlgorithmsAlzheimer DiseaseComputer SimulationHumansKineticsAmyloid beta-Peptides

Identifiers

PMID40055511
PMCPMC11889170

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.