Evidence map›Paper›PMID 40052500›Full record

ReviewThe Plant journal : for cell and molecular biology2025

The switch-liker's guide to plant synthetic gene circuits.

James P B Lloyd, Adil Khan, Ryan Lister

Abstract readReview
In one paragraph

Review in The Plant journal : for cell and molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. The Promise of Synthetic Biology for Redesigning Plant Architecture.International journal of molecular sciences · 2026
    Review
  5. Review
  6. Traceless Regulation of Genetic Circuitry.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  7. Review
  8. Review
  9. A Modular and Customizable CRISPR/Cas Toolkit for Epigenome Editing of Cis-regulatory Modules.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

James P B Lloyd *ARC Centre of Excellence in Plants for Space, School of Molecular Sciences, The University of Western Australia, Perth, Australia.ORCID 0000-0002-4492-1368
Adil Khan *ARC Centre of Excellence in Plants for Space, School of Molecular Sciences, The University of Western Australia, Perth, Australia.ORCID 0009-0004-0090-0807
Ryan ListerARC Centre of Excellence in Plants for Space, School of Molecular Sciences, The University of Western Australia, Perth, Australia.ORCID 0000-0001-6637-7239

Funding

Australian Research Council CE230100015Australian Research Council DP240103385Clifford Bradley Robertson and Gwendoline Florence Robertson fundNational Health and Medical Research Council GNT1178460
6 · The paper itself

Abstract

Synthetic gene circuits offer powerful new approaches for engineering plant traits by enabling precise control over gene expression through programmable logical operations. Unlike simple 'always-on' transgenes, circuits can integrate multiple input signals to achieve sophisticated spatiotemporal regulation of target genes while minimising interference with host cellular processes. Recent advances have demonstrated several platforms for building plant gene circuits, including systems based on bacterial transcription factors, site-specific recombinases and CRISPR/Cas components. These diverse molecular tools allow the construction of circuits that perform Boolean logic operations to control transgene expression or modulate endogenous pathways. However, implementing synthetic gene circuits in plants faces unique challenges, including long generation times that slow design-build-test cycles, limited availability of characterised genetic parts across species and technical hurdles in stable transformation. This review examines the core principles and components of plant synthetic gene circuits, including sensors, integrators, and actuators. We discuss recent technological developments, key challenges in circuit design and implementation, and strategies to overcome them. Finally, we explore the future applications of synthetic gene circuits in agriculture and basic research, from engineering stress resistance to enabling controlled bioproduction of valuable compounds. As this technology matures, synthetic gene circuits have the potential to enable sophisticated new plant traits that respond dynamically to environmental and developmental cues.

Indexed as

Gene Regulatory NetworksGenes, PlantGenes, SyntheticGenetic EngineeringPlantsCRISPR-Cas SystemsGene Expression Regulation, PlantPlants, Genetically ModifiedSynthetic Biologybiotechnologygene circuitsgeneticssynthetic biology

Identifiers

PMID40052500
PMCPMC11887007

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.