Evidence map›Paper›PMID 40052409›Full record

ArticleAngewandte Chemie (International ed. in English)2025

A DNP-Supported Solid-State NMR Approach to Study Nucleic Acids In Situ Reveals Berberine-Stabilized Hoogsteen Structures in Mitochondria.

Michaela Dzurov Krafčíková, David Beriashvili, Salima Bahri, Menno Bergmeijer, Stuart C Howes, Andrei Gurinov, Friedrich G Förster, Gert E Folkers, Marc Baldus

Abstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Targeted NMR signal enhancement of RNA by site-directed bis-nitroxide labeling.Proceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Michaela Dzurov Krafčíková *NMR Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, Utrecht, 3584CH, The Netherlands.
David Beriashvili *NMR Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, Utrecht, 3584CH, The Netherlands.
Salima BahriNMR Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, Utrecht, 3584CH, The Netherlands.
Menno BergmeijerStructural Biochemistry, Bijvoet Center for Biomolecular Research, Utrecht University, Universiteitsweg 99, Utrecht, 3584CG, The Netherlands.
Stuart C HowesStructural Biochemistry, Bijvoet Center for Biomolecular Research, Utrecht University, Universiteitsweg 99, Utrecht, 3584CG, The Netherlands.
Andrei GurinovNMR Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, Utrecht, 3584CH, The Netherlands.
Friedrich G FörsterStructural Biochemistry, Bijvoet Center for Biomolecular Research, Utrecht University, Universiteitsweg 99, Utrecht, 3584CG, The Netherlands.
Gert E FolkersNMR Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, Utrecht, 3584CH, The Netherlands.
Marc BaldusNMR Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, Utrecht, 3584CH, The Netherlands.

Funding

European Molecular Biology Organization ALTF 410-2021National Roadmap Large-Scale NMR Facility of the Netherlands 184.032.207TOP-PUNT 718.015.001uNMR-NL grid 184.035.002
6 · The paper itself

Abstract

Mitochondria are central to cellular bioenergetics, with the unique ability to translate and transcribe a subset of their own proteome. Given the critical importance of energy production, mitochondria seem to utilize higher-order nucleic acid structures to regulate gene expression, much like nuclei. Herein, we introduce a tailored approach to probe the formation of such structures, specifically G-quadruplexes, within intact mitochondria by using sensitivity-enhanced dynamic nuclear polarization-supported solid-state NMR (DNP-ssNMR). We acquired NMR spectra on isolated intact isotopically labeled mitochondria treated with berberine, a known high-affinity G-quadruplex stabilizer. The DNP-ssNMR data revealed spectral changes in nucleic acid sugar correlations, increased signal intensity for guanosine carbons, and enhanced Hoogsteen hydrogen bond formation, providing evidence of in vivo G-quadruplex formation in mitochondria. Together, our workflow enables the study of mitochondrial nucleic acid-ligand interactions at endogenous concentrations within biologically relevant environments by DNP-ssNMR, thus paving the way for future research into mitochondrial diseases and their potential treatments.

Indexed as

BerberineMitochondriaNucleic AcidsG-QuadruplexesHumansMagnetic Resonance SpectroscopyNuclear Magnetic Resonance, BiomolecularBerberineNucleic AcidsBerberineDNA/RNADNP‐ssNMRG‐quadruplexMitochondria

Identifiers

PMID40052409
PMCPMC12087828

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.