Evidence map›Paper›PMID 40048539›Full record

ArticleScience (New York, N.Y.)2025

A subcellular map of translational machinery composition and regulation at the single-molecule level.

Zijian Zhang, Adele Xu, Yunhao Bai, Yuxiang Chen, Kitra Cates, Craig Kerr, Abel Bermudez, Teodorus Theo Susanto, Kelsie Wysong, Fernando J García Marqués and 3 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Condensates on the Move: Midbody Remnants as Large, Translation-Competent Extracellular Vesicles.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  6. Article
  7. Article
  8. Review
  9. Subcellular localization as a driver of protein function.Nature reviews. Molecular cell biology · 2026
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Neuronal processes contain the essential components for the late steps of ribosome biogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Zijian Zhang *Department of Chemical and Systems Biology, Stanford School of Medicine, Stanford, CA, USA.ORCID 0009-0009-0938-1798
Adele Xu *Department of Genetics, Stanford School of Medicine, Stanford, CA, USA.ORCID 0000-0003-3332-5285
Yunhao BaiDepartment of Chemistry, Stanford University, Stanford, CA, USA.
Yuxiang ChenDepartment of Genetics, Stanford School of Medicine, Stanford, CA, USA.ORCID 0000-0002-3231-2047
Kitra CatesDepartment of Genetics, Stanford School of Medicine, Stanford, CA, USA.ORCID 0000-0001-7716-153X
Craig KerrDepartment of Genetics, Stanford School of Medicine, Stanford, CA, USA.ORCID 0000-0002-4793-2855
Abel BermudezDepartment of Radiology, Stanford School of Medicine, Stanford, CA, USA.ORCID 0009-0002-3235-5538
Teodorus Theo SusantoDepartment of Genetics, Stanford School of Medicine, Stanford, CA, USA.ORCID 0000-0002-5537-3360
Kelsie WysongDepartment of Genetics, Stanford School of Medicine, Stanford, CA, USA.ORCID 0000-0001-5312-0944
Fernando J García MarquésDepartment of Radiology, Stanford School of Medicine, Stanford, CA, USA.ORCID 0000-0002-2105-2905
Garry P NolanDepartment of Pathology, Stanford School of Medicine, Stanford, CA, USA.ORCID 0000-0002-8862-9043
Sharon PitteriDepartment of Radiology, Stanford School of Medicine, Stanford, CA, USA.ORCID 0000-0002-3119-873X
Maria BarnaDepartment of Genetics, Stanford School of Medicine, Stanford, CA, USA.ORCID 0000-0002-6843-4396

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007365 · NIGMS · STANFORD UNIVERSITY · PI CHUA, KATRIN F · 1985 to 2021
$33.8M
Specialized Translational Control of Stem Cell Differentiation and Embryonic DevelopmentR01HD086634 · NICHD · STANFORD UNIVERSITY · PI BARNA, MARIA · 2016 to 2025
$5.5M
A ribosome interactome that regulates local translation and neural functionR21MH130323 · NIMH · STANFORD UNIVERSITY · PI BARNA, MARIA · 2022 to 2023
$433k
CELL TYPE-SPECIFIC CONTROL of GENE EXPRESSION by RIBOSOMAL PROTEIN ISOFORMSF30HD100123 · NICHD · STANFORD UNIVERSITY · PI XU, ADELE FRANCIS · 2019 to 2023
$133k
NICHD NIH HHS F30 HD100123NICHD NIH HHS R01 HD086634NIGMS NIH HHS T32 GM007365NIMH NIH HHS R21 MH130323
6 · The paper itself

Abstract

Millions of ribosomes are packed within mammalian cells, yet we lack tools to visualize them in toto and characterize their subcellular composition. In this study, we present ribosome expansion microscopy (RiboExM) to visualize individual ribosomes and an optogenetic proximity-labeling technique (ALIBi) to probe their composition. We generated a super-resolution ribosomal map, revealing subcellular translational hotspots and enrichment of 60

Indexed as

Protein BiosynthesisRibosomesSingle Molecule ImagingAnimalsEndoplasmic ReticulumHumansMiceMitochondriaNeuronsOptogeneticsPolyribosomesRibosomal ProteinsRibosomal Proteins

Identifiers

PMID40048539
PMCPMC13102253

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.