Evidence map›Paper›PMID 40048274›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

State-dependent motion of a genetically encoded fluorescent biosensor.

Paul C Rosen, Samantha M Horwitz, Daniel J Brooks, Erica Kim, Joseph A Ambarian, Lidia Waidmann, Katherine M Davis, Gary Yellen

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. De Novo Design of High-Performance Cortisol Luminescent Biosensors.Journal of the American Chemical Society · 2025
    Article
  4. Mechanism and application of thiol-disulfide redox biosensors with a fluorescence-lifetime readout.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Paul C RosenDepartment of Neurobiology, Harvard Medical School, Boston, MA 02115.ORCID 0000-0001-7414-454X
Samantha M HorwitzDepartment of Chemistry, Emory University, Atlanta, GA 30322.
Daniel J BrooksDepartment of Neurobiology, Harvard Medical School, Boston, MA 02115.
Erica KimDepartment of Neurobiology, Harvard Medical School, Boston, MA 02115.
Joseph A AmbarianDepartment of Chemistry, Emory University, Atlanta, GA 30322.
Lidia WaidmannDepartment of Chemistry, Emory University, Atlanta, GA 30322.
Katherine M DavisDepartment of Chemistry, Emory University, Atlanta, GA 30322.
Gary YellenDepartment of Neurobiology, Harvard Medical School, Boston, MA 02115.ORCID 0000-0003-4228-7866

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Lin Yang · 2019 to 2026
$38.6M
User Training & OutreachP30GM138396 · NIGMS · UCHICAGO ARGONNE, LLC · PI ROBERT F. FISCHETTI, JANET L. SMITH · 2020 to 2026
$34.3M
High-throughput optimization of genetically-encoded fluorescent biosensorsR01GM124038 · NIGMS · HARVARD MEDICAL SCHOOL · PI YELLEN, GARY I · 2017 to 2025
$2.5M
High-Speed High-Sensitivity Detector for X-ray Micro-Crystallography at GM/CA@APSS10OD012289 · OD · UNIVERSITY OF CHICAGO · PI FISCHETTI, ROBERT F. · 2014 to 2014
$2.0M
Understanding Compartmentalized Leucine Metabolism Downstream of mTORC1 SignalingF31CA254162 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ROSEN, PAUL · 2020 to 2023
$186k
Department of Neurobiology, Harvard Medical School Quan FellowshipDOE | Office of Science (SC) DE-AC02-06CH11357DOE | Office of Science (SC) DE-SC0012704DOE | SC | Biological and Environmental Research (BER) KP1607011Emory University (EU) Start-up fundsHHS | NIH | National Cancer Institute (NCI) ACB-12002HHS | NIH | National Institute of General Medical Sciences (NIGMS) AGM-12006Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (KI) Footbridge GrantNCI NIH HHS F31 CA254162NIGMS NIH HHS P30 GM133893NIGMS NIH HHS P30 GM138396NIGMS NIH HHS R01 GM124038NIH HHS S10 OD012289NSF (NSF) Graduate Research FellowshipODCDC CDC HHS S10 OD012289
6 · The paper itself

Abstract

Genetically encoded biosensors can measure biochemical properties such as small-molecule concentrations with single-cell resolution, even in vivo. Despite their utility, these sensors are "black boxes": Very little is known about the structures of their low- and high-fluorescence states or what features are required to transition between them. We used LiLac, a lactate biosensor with a quantitative fluorescence-lifetime readout, as a model system to address these questions. X-ray crystal structures and engineered high-affinity metal bridges demonstrate that LiLac exhibits a large interdomain twist motion that pulls the fluorescent protein away from a "sealed," high-lifetime state in the absence of lactate to a "cracked," low-lifetime state in its presence. Understanding the structures and dynamics of LiLac will help to think about and engineer other fluorescent biosensors.

Indexed as

Biosensing TechniquesLuminescent ProteinsCrystallography, X-RayFluorescenceGreen Fluorescent ProteinsLactic AcidModels, MolecularGreen Fluorescent ProteinsLactic AcidLuminescent Proteinsgenetically encoded fluorescent biosensormetabolite biosensorprotein conformational change

Identifiers

PMID40048274
PMCPMC11912384

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.