ArticleNature2025
Fine-scale patterns of SARS-CoV-2 spread from identical pathogen sequences.
Abstract read
In one paragraph
Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
11 citing papers in PubMed.
- Human mobility acts as a lever for decarbonising wastewater treatment plants.Environmental science and ecotechnology · 2026Article
- Long-term spatiotemporal evolution of drug-resistant Mycobacterium tuberculosis in China.Nature communications · 2026Article
- Characterizing the informativeness of pathogen genome sequence datasets about transmission between population groups.Proceedings. Biological sciences · 2026Article
- Rapid evolution reveals long-range spread of SARS-CoV-2.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
- Reconstructing the early spatial spread of pandemic respiratory viruses in the United States.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
- Uncovering heterogeneous intercommunity disease transmission from neutral allele frequency time series.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- Reconstructing the early spatial spread of pandemic respiratory viruses in the United States.medRxiv : the preprint server for health sciences · 2025Article
- The Data are Insufficient to Confidently Root the SARS-CoV-2 Phylogenetic Tree.Molecular biology and evolution · 2025Article
- Epidemic-induced local awareness behavior inferred from surveys and genetic sequence data.Nature communications · 2025Article
- Geospatial and demographic patterns of SARS-CoV-2 spread in Massachusetts from over 130,000 genomes.medRxiv : the preprint server for health sciences · 2025Article
- Fine-scale spatial and social patterns of SARS-CoV-2 transmission from identical pathogen sequences.medRxiv : the preprint server for health sciences · 2024Article
Corrections and comments
- Update of
Authors and funding
26 authors.
Cécile Tran-KiemVaccine and Infectious Diseases Division, Fred Hutchinson Cancer Center, Seattle, WA, USA. ctrankie@fredhutch.org.ORCID 0000-0003-0563-8428
Miguel I ParedesVaccine and Infectious Diseases Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Amanda C PerofskyBrotman Baty Institute, University of Washington, Seattle, WA, USA.ORCID 0000-0001-7341-9193
Lauren A FrisbieWashington State Department of Health, Shoreline, WA, USA.
Hong XieDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Kevin KongDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Amelia WeixlerDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Alexander L GreningerVaccine and Infectious Diseases Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-7443-0527
Pavitra RoychoudhuryVaccine and Infectious Diseases Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-4567-8232
JohnAric M PetersonWashington State Department of Health, Shoreline, WA, USA.
Andrew DelgadoWashington State Department of Health, Shoreline, WA, USA.
Holly HalsteadWashington State Department of Health, Shoreline, WA, USA.
Drew MacKellarWashington State Department of Health, Shoreline, WA, USA.
Philip DykemaWashington State Department of Health, Shoreline, WA, USA.
Luis GamboaBrotman Baty Institute, University of Washington, Seattle, WA, USA.
Chris D FrazarDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Erica RykeDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Jeremy StoneBrotman Baty Institute, University of Washington, Seattle, WA, USA.
David ReinhartBrotman Baty Institute, University of Washington, Seattle, WA, USA.
Lea StaritaBrotman Baty Institute, University of Washington, Seattle, WA, USA.
Allison ThibodeauWashington State Department of Health, Shoreline, WA, USA.
Cory YunWashington State Department of Health, Shoreline, WA, USA.
Frank AragonaWashington State Department of Health, Shoreline, WA, USA.
Allison BlackWashington State Department of Health, Shoreline, WA, USA.
Cécile ViboudFogarty International Center, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0003-3243-4711
Trevor BedfordVaccine and Infectious Diseases Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Funding
University of Washington Medical Scientist Training ProgramT32GM153182 · NIGMS · UNIVERSITY OF WASHINGTON · PI MARSHALL S. HORWITZ · 2024 to 2026
$5.3MReal-time tracking of virus evolution for vaccine strain selection and epidemiological investigationR35GM119774 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BEDFORD, TREVOR BC · 2016 to 2025
$4.1MHigh-Performance Compute Cluster for Comprehensive Cancer and Infectious Diseases ResearchS10OD028685 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BRADLEY, PHILIP · 2020 to 2020
$2.0MFHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600kNCEZID CDC HHS U01 CK000630NIGMS NIH HHS R35 GM119774NIGMS NIH HHS T32 GM153182NIH HHS S10 OD020069NIH HHS S10 OD028685
Abstract
Pathogen genomics can provide insights into underlying infectious disease transmission patterns
Indexed as
COVID-19Genome, ViralSARS-CoV-2AdolescentAdultAgedAge FactorsChildChild, PreschoolFemaleGenomicsHumansInfantMaleMiddle AgedWashington
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.