ArticleNature2025
Solanum pan-genetics reveals paralogues as contingencies in crop engineering.
Abstract read
In one paragraph
Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
35 citing papers in PubMed.
- Genome-Wide Identification of CRK Family Members in Solanaceae Crops and Functional Characterization ofCurrent issues in molecular biology · 2026Article
- Advances in genomics-driven genetic decoding and genomic design breeding in tomato.Horticulture research · 2026Article
- Genomic constraint and hypervariability correlate with fitness effects in elite tetraploid potato breeding material.PLoS genetics · 2026Article
- Fine-tuning quantitative agronomic traits by manipulating gene copy number in rice.The New phytologist · 2026Article
- Turbocharging crop breeding with integrated biotechnology for a climate-resilient future.Journal of integrative plant biology · 2026Review
- Pan-Genome Analysis Reveals Evolutionary Dynamics and Functional Divergence of thePlants (Basel, Switzerland) · 2026Article
- Wild tomato genome assemblies reveal structural variants and repeat content act as recombination barriers.Nature communications · 2026Article
- Review
- Toward telomere-to-telomere genomics in Fabaceae: Unlocking comparative and functional insights into symbiotic nitrogen fixation.Cell genomics · 2026Review
- Pangenome and resequencing analyses reveal flowering evolution and genetic control in Cerasus.Nature communications · 2026Article
- A new super-pangenome pipeline reveals domestication signatures of conserved noncoding sequences in the orange subfamily.Molecular biology and evolution · 2026Article
- Comparative centromere genomics reveals evolutionary divergence in Solanaceae genomes.Genome biology · 2026Article
- A tomato telomere-to-telomere super-pangenome empowers stress resilience breeding.Nature genetics · 2026Article
- A PPR gene cluster from Solanum aethiopicum underlies fertility restoration in cytoplasmic male-sterile eggplant (S. melongena L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- From Lab to Field: CRISPRing Major CultivatedInternational journal of molecular sciences · 2026Review
- Sub-pangenome analysis reveals structural variants associated with fruit color and bacterial wilt resistance in eggplant.Nature communications · 2026Article
- A neofunctionalized flowering antagonist created an evolutionary contingency that channeled Solanaceae adaptation.bioRxiv : the preprint server for biology · 2026Article
- Shaping immunity: Genetic diversity as a key resource for crop protection.PLoS pathogens · 2026Article
- Building genomic resources to facilitate the study and use of Solanum microdontum, a wild relative of cultivated potato.G3 (Bethesda, Md.) · 2026Article
- quercusTOA: integrating functional annotations and comparative genomics across oak lineages.Frontiers in bioinformatics · 2026Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
34 authors.
Matthias Benoit *Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0002-3958-3173
Katharine M Jenike *Department of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, MD, USA.
James W SatterleeHoward Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0002-0267-4944
Srividya RamakrishnanDepartment of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Iacopo GentileSchool of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Anat HendelmanHoward Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Michael J PassalacquaSchool of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0002-6344-1175
Hamsini SureshSchool of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Hagai ShohatCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0003-1195-7986
Gina M RobitailleHoward Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0002-7654-5002
Blaine FitzgeraldHoward Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Michael AlongeDepartment of Computer Science, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0002-3692-1819
Xingang WangCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0003-4317-6957
Ryan SantosCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Jia HeHoward Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0001-6086-0115
Shujun OuDepartment of Computer Science, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0001-5938-7180
Hezi GolanSiteKicks.ai, Setauket, NY, USA.
Yumi GreenBoyce Thompson Institute, Ithaca, NY, USA.
Kerry SwartwoodBoyce Thompson Institute, Ithaca, NY, USA.ORCID 0009-0001-9700-8302
Nicholas G KaravoliasHoward Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Gina P SierraMax Planck Tandem Group, Facultad de Ciencias, Universidad Nacional de Colombia, Bogotá, Colombia.
Andres OrejuelaDepartamento de Biología, Facultad de Ciencias Exactas y Naturales, Universidad de Cartagena, Cartagena de Indias, Colombia.
Federico RodaMax Planck Tandem Group, Facultad de Ciencias, Universidad Nacional de Colombia, Bogotá, Colombia.
Sara GoodwinCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
W Richard McCombieCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Elizabeth B KizitoFaculty of Agricultural Sciences, Uganda Christian University, Mukono, Uganda.ORCID 0000-0003-2558-8309
Edeline GagnonDepartment of Integrative Biology, University of Guelph, Guelph, Ontario, Canada.
Sandra KnappNatural History Museum, London, UK.ORCID 0000-0001-7698-3945
Tiina E SärkinenRoyal Botanic Garden Edinburgh, Edinburgh, UK.ORCID 0000-0002-6956-3093
Amy FraryDepartment of Biological Sciences, Mount Holyoke College, South Hadley, MA, USA.
Jesse GillisCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. jesse.gillis@utoronto.ca.ORCID 0000-0002-0936-9774
Joyce Van EckBoyce Thompson Institute, Ithaca, NY, USA. jv27@cornell.edu.ORCID 0000-0002-8005-365X
Michael C SchatzDepartment of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, MD, USA. mschatz@cs.jhu.edu.ORCID 0000-0002-4118-4446
Zachary B LippmanHoward Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. lippman@cshl.edu.ORCID 0000-0001-7668-9025
Funding
Democratization of Data Analysis in Life Sciences Through GalaxyU24HG006620 · NHGRI · PENNSYLVANIA STATE UNIVERSITY, THE · PI Daniel James Blankenberg, Jeremy Goecks · 2021 to 2026
$9.8MRevealing the transcriptomic basis of neuronal identity through functional meta-analysisR01MH113005 · NIMH · COLD SPRING HARBOR LABORATORY · PI GILLIS, JESSE · 2017 to 2021
$2.4MThe Development and Optimization of Long-Read Sequencing Applications to Cancer Genomics in a Core SettingR50CA243890 · NCI · COLD SPRING HARBOR LABORATORY · PI GOODWIN, SARA · 2019 to 2025
$920kNCI NIH HHS R50 CA243890NHGRI NIH HHS U24 HG006620NIMH NIH HHS R01 MH113005
Abstract
Pan-genomics and genome-editing technologies are revolutionizing breeding of global crops
Indexed as
Crops, AgriculturalGenome, PlantSolanumDomesticationEvolution, MolecularFruitGene DuplicationGene EditingGenomicsGenotypePhenotypePhylogenyPlant BreedingSolanum melongenaSynteny
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What OpenQuestion holds
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LicenceCC BY
Read underepoch 390
Registered trials
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.