Evidence map›Paper›PMID 40043127›Full record

ArticleScience advances2025

Discovery of antimicrobial peptides with notable antibacterial potency by an LLM-based foundation model.

Jike Wang, Jianwen Feng, Yu Kang, Peichen Pan, Jingxuan Ge, Yan Wang, Mingyang Wang, Zhenxing Wu, Xingcai Zhang, Jiameng Yu and 9 more

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Artificial intelligence catalyzes antimicrobial peptide design.Synthetic and systems biotechnology · 2027
    Review
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  11. Machine-Learning Microfluidic Minute-Scale Microorganism Metrics Monitoring(M6).Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
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  20. De Novo Multi-Mechanism Antimicrobial Peptide Design via Multimodal Deep Learning.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Jike WangCollege of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China.ORCID 0000-0002-8118-8572
Jianwen FengSchool of Pharmaceutical Sciences, Southern Medical University, Guangzhou 510515, Guangdong, China.ORCID 0009-0002-5454-5738
Yu KangCollege of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China.ORCID 0000-0002-0999-8802
Peichen PanCollege of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China.ORCID 0000-0003-1152-7759
Jingxuan GeCollege of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China.ORCID 0009-0006-9835-5660
Yan WangSchool of Pharmaceutical Sciences, Southern Medical University, Guangzhou 510515, Guangdong, China.
Mingyang WangCollege of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China.ORCID 0009-0001-2779-5769
Zhenxing WuCollege of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China.
Xingcai ZhangJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0001-7114-1095
Jiameng YuGraduate School, Guangzhou University of Chinese Medicine, Guangzhou 510006, Guangdong, China.
Xujun ZhangCollege of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China.ORCID 0000-0002-5633-1517
Tianyue WangCollege of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China.
Lirong WenSchool of Pharmaceutical Sciences, Dali University, Dali 671003, Yunan, China.
Guangning YanDepartment of Pathology, General Hospital of Southern Theatre Command, Guangzhou 510010, China.
Yafeng DengCarbonSilicon AI Technology Co. Ltd., Hangzhou 310018, Zhejiang, China.ORCID 0000-0003-2416-6913
Hui ShiCarbonSilicon AI Technology Co. Ltd., Hangzhou 310018, Zhejiang, China.
Chang-Yu HsiehCollege of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China.ORCID 0000-0002-6242-4218
Zhihui JiangSchool of Pharmaceutical Sciences, Southern Medical University, Guangzhou 510515, Guangdong, China.ORCID 0000-0002-5076-5752
Tingjun HouCollege of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China.ORCID 0000-0001-7227-2580

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Large language models (LLMs) have shown remarkable advancements in chemistry and biomedical research, acting as versatile foundation models for various tasks. We introduce AMP-Designer, an LLM-based approach, for swiftly designing antimicrobial peptides (AMPs) with desired properties. Within 11 days, AMP-Designer achieved the de novo design of 18 AMPs with broad-spectrum activity against Gram-negative bacteria. In vitro validation revealed a 94.4% success rate, with two candidates demonstrating exceptional antibacterial efficacy, minimal hemotoxicity, stability in human plasma, and low potential to induce resistance, as evidenced by significant bacterial load reduction in murine lung infection experiments. The entire process, from design to validation, concluded in 48 days. AMP-Designer excels in creating AMPs targeting specific strains despite limited data availability, with a top candidate displaying a minimum inhibitory concentration of 2.0 micrograms per milliliter against

Indexed as

Anti-Bacterial AgentsAntimicrobial PeptidesDrug DiscoveryAnimalsGram-Negative BacteriaHumansMiceMicrobial Sensitivity TestsPropionibacterium acnesAnti-Bacterial AgentsAntimicrobial Peptides

Identifiers

PMID40043127
PMCPMC13109931

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.