Evidence map›Paper›PMID 40043106›Full record

ArticleScience advances2025

Aging activates escape of the silent X chromosome in the female mouse hippocampus.

Margaret Gadek, Cayce K Shaw, Samira Abdulai-Saiku, Rowan Saloner, Francesca Marino, Dan Wang, Luke W Bonham, Jennifer S Yokoyama, Barbara Panning, Bérénice A Benayoun and 3 more

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Age-related erosion of X chromosome inactivation in human tissues.bioRxiv : the preprint server for biology · 2026
    Article
  9. Article
  10. Review
  11. Sex differences in brain glucose metabolism and Alzheimer's disease risk and progression.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Review
  12. Article
  13. Article
  14. ECHOS enables spatial epigenome profiling at subcellular resolution.bioRxiv : the preprint server for biology · 2026
    Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Margaret GadekDepartment of Neurology and Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0001-5453-6909
Cayce K ShawDepartment of Neurology and Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0001-6636-9810
Samira Abdulai-SaikuDepartment of Neurology and Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0003-3772-4646
Rowan SalonerDepartment of Neurology and Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0002-1351-6183
Francesca MarinoDepartment of Neurology and Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0002-7899-4282
Dan WangDepartment of Neurology and Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.
Luke W BonhamMemory and Aging Center, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0002-2533-1266
Jennifer S YokoyamaDepartment of Neurology and Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0001-7274-2634
Barbara PanningDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0002-8301-1172
Bérénice A BenayounLeonard Davis School of Gerontology, University of Southern California, Los Angeles, CA, USA.ORCID 0000-0002-7401-4777
Kaitlin B CasalettoDepartment of Neurology and Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0001-5000-7604
Vijay RamaniDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0003-3345-5960
Dena B DubalDepartment of Neurology and Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0001-7504-4372

Funding

Biomedical Imaging for Clinician ScientistsT32EB001631 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI THOMAS M LINK · 2005 to 2026
$5.6M
Elucidating clinical heterogeneity in early-onset AD via genomics, transcriptomics, and neuroimagingR01AG062588 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI YOKOYAMA, JENNIFER S · 2019 to 2023
$4.0M
Mechanisms of X-Chromosome-dependent Sex Difference inAlzheimers DiseaseRF1AG068325 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DUBAL, DENA BOU · 2020 to 2020
$2.3M
Sex Differences in Epigenetic Parent-of-X Origin and Alzheimer's DiseaseRF1AG079176 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DUBAL, DENA BOU · 2022 to 2022
$1.7M
Sex Differences in Epigenetic Parent-of-X Origin and Alzheimer's DiseaseR01AG079176 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Dena Bou Dubal · 2025 to 2026
$976k
Mechanisms of X-Chromosome-dependent Sex Difference inAlzheimers DiseaseR01AG068325 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DUBAL, DENA BOU · 2024 to 2024
$526k
NIA NIH HHS R01 AG062588NIA NIH HHS R01 AG068325NIA NIH HHS R01 AG079176NIA NIH HHS RF1 AG068325NIA NIH HHS RF1 AG079176NIBIB NIH HHS T32 EB001631
6 · The paper itself

Abstract

Women live longer than men and exhibit less cognitive aging. The X chromosome contributes to sex differences, as females harbor an inactive X (Xi) and active X (Xa), in contrast to males with only an Xa. Thus, reactivation of silent Xi genes may contribute to sex differences. We use allele-specific, single-nucleus RNA sequencing to show that aging remodels transcription of the Xi and Xa across hippocampal cell types. Aging preferentially changed gene expression on the X's relative to autosomes. Select genes on the Xi underwent activation, with new escape across cells including in the dentate gyrus, critical to learning and memory. Expression of the Xi escapee

Indexed as

AgingHippocampusX ChromosomeX Chromosome InactivationAnimalsDentate GyrusFemaleMaleMiceSex Characteristics

Identifiers

PMID40043106
PMCPMC11881916

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.