Evidence map›Paper›PMID 40040486›Full record

ArticleMolecular ecology2025

Otolith and Genomic Data Reveal Temporal Insights Into Stocking Across a Large River Basin in a Mobile, Long-Lived Australian Freshwater Fish Species.

Katherine A Harrisson, Luciano B Beheregaray, Christopher M Bice, Emily J Booth, Chris J Brauer, Gavin L Butler, David Dawson, Olga Dudchenko, Benjamin G Fanson, Graeme Hackett and 18 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Molecular ecology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Katherine A HarrissonDepartment of Environment and Genetics, La Trobe University, Melbourne, Australia.ORCID 0000-0002-8070-8070
Luciano B BeheregarayMolecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, South Australia, Australia.ORCID 0000-0003-0944-3003
Christopher M BiceSouth Australian Research and Development Institute (SARDI), Aquatic Sciences, South Australia, Australia.
Emily J BoothMolecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, South Australia, Australia.
Chris J BrauerMolecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, South Australia, Australia.ORCID 0000-0003-2968-5915
Gavin L ButlerDepartment of Primary Industries and Regional Development, Grafton Fisheries Centre, Grafton, New South Wales, Australia.
David DawsonDepartment of Energy, Environment and Climate Action, Arthur Rylah Institute for Environmental Research, Melbourne, Victoria, Australia.
Olga DudchenkoDepartment of Molecular and Human Genetics, The Center for Genome Architecture, Baylor College of Medicine, Houston, Texas, USA.
Benjamin G FansonDepartment of Energy, Environment and Climate Action, Arthur Rylah Institute for Environmental Research, Melbourne, Victoria, Australia.
Graeme HackettDepartment of Energy, Environment and Climate Action, Arthur Rylah Institute for Environmental Research, Melbourne, Victoria, Australia.
Annique HarrisDepartment of Energy, Environment and Climate Action, Arthur Rylah Institute for Environmental Research, Melbourne, Victoria, Australia.
Matthew J JonesDepartment of Energy, Environment and Climate Action, Arthur Rylah Institute for Environmental Research, Melbourne, Victoria, Australia.
Parwinder KaurUWA School of Agriculture and Environment, University of Western Australia, Perth, Australia.
Wayne M KosterDepartment of Energy, Environment and Climate Action, Arthur Rylah Institute for Environmental Research, Melbourne, Victoria, Australia.
Kyne Krusic-GolubFish Ageing Services Pty Ltd., Queenscliff, Victoria, Australia.
Erez Lieberman AidenDepartment of Molecular and Human Genetics, The Center for Genome Architecture, Baylor College of Medicine, Houston, Texas, USA.
Jason A LieschkeDepartment of Energy, Environment and Climate Action, Arthur Rylah Institute for Environmental Research, Melbourne, Victoria, Australia.
Jarod LyonDepartment of Energy, Environment and Climate Action, Arthur Rylah Institute for Environmental Research, Melbourne, Victoria, Australia.
John R MorrongielloSchool of BioSciences, University of Melbourne, Melbourne, Australia.
Nicholas P MurphyDepartment of Environment and Genetics, La Trobe University, Melbourne, Australia.
James O'DwyerDepartment of Environment and Genetics, La Trobe University, Melbourne, Australia.
Scott M C RaymondDepartment of Energy, Environment and Climate Action, Arthur Rylah Institute for Environmental Research, Melbourne, Victoria, Australia.
Meaghan L RourkeDepartment of Primary Industries and Regional Development, Narrandera Fisheries Centre, Narrandera, New South Wales, Australia.ORCID 0000-0003-3709-359X
Arron StrawbridgeSouth Australian Research and Development Institute (SARDI), Aquatic Sciences, South Australia, Australia.
Jason D ThiemDepartment of Primary Industries and Regional Development, Narrandera Fisheries Centre, Narrandera, New South Wales, Australia.ORCID 0000-0002-5585-8560
Zeb TonkinDepartment of Energy, Environment and Climate Action, Arthur Rylah Institute for Environmental Research, Melbourne, Victoria, Australia.
Jian D L YenDepartment of Energy, Environment and Climate Action, Arthur Rylah Institute for Environmental Research, Melbourne, Victoria, Australia.ORCID 0000-0001-7964-923X
Brenton P ZampattiCommonwealth Scientific and Industrial Research Organisation (CSIRO), Environment Reseach Unit, Glen Osmond, South Australia, Australia.ORCID 0000-0001-7394-1387

Funding

Center for Genome ImagingRM1HG011016 · NHGRI · HARVARD MEDICAL SCHOOL · PI WU, CHAO-TING · 2021 to 2025
$12.2M
GENOME WIDE MAPPING OF LOOPS USING IN SITU HI-CUM1HG009375 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI LIEBERMAN-AIDEN, EREZ · 2017 to 2021
$4.7M
Behavioral Plasticity Research Institute NSFDBI-2021795National Human Genome Research Institute of the National Institutes of Health RM1HG011016-01A1NHGRI NIH HHS RM1 HG011016NHGRI NIH HHS UM1 HG009375NIH Encyclopedia of DNA Elements Mapping Center Award UM1HG009375NSF Physics Frontiers Center Award NSF PHY-2019745US-Israel Binational Science Foundation Award 2019276Welch Foundation Q-1866
6 · The paper itself

Abstract

Freshwater ecosystems and their biota are under increasing pressure from anthropogenic stressors. In response to declining fish stocks, hatchery and stocking programmes are widely implemented as core components of restoration and management strategies, with positive outcomes for some wild populations. Despite this, stocking remains contentious due to potential genetic and ecological risks to wild populations. Monitoring and evaluation of stocking outcomes are critical to ensuring the long-term sustainability of wild populations, but identification of stocked individuals post-release remains a key challenge, particularly for mobile species. In this study, we combined otolith (natal origin and age) and genomic data to identify stocked individuals and evaluate the genetic implications of stocking for a culturally and socioeconomically important and mobile freshwater fish, golden perch Macquaria ambigua (family: Percichthyidae), across Australia's Murray-Darling Basin (MDB). We also generated a chromosome-level genome assembly. Many close kin were detected across the MDB, increasing in prevalence over recent decades and mostly of hatchery origin. Rivers with many close kin were associated with low effective population sizes (N

Indexed as

FishesGenetics, PopulationOtolithic MembranePerchesAnimalsAustraliaEcosystemFisheriesFresh WaterGenomicsPopulation DensityRiversconservation geneticsconservation managementfishfisheries genomicsfisheries managementwildlife management

Identifiers

PMID40040486
PMCPMC11934090

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.