Evidence map›Paper›PMID 40038298›Full record

ArticleNature communications2025

Distinct gene regulatory dynamics drive skeletogenic cell fate convergence during vertebrate embryogenesis.

Menghan Wang, Ana Di Pietro-Torres, Christian Feregrino, Maëva Luxey, Chloé Moreau, Sabrina Fischer, Antoine Fages, Danilo Ritz, Patrick Tschopp

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Cell type diversification and phenotype convergence underlying white fin-ornamentation of cyprinid fishes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Decoding cnidarian cell type gene regulation.Nature ecology & evolution · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Menghan Wang *Zoology, Department of Environmental Sciences, University of Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0003-1133-2994
Ana Di Pietro-Torres *Zoology, Department of Environmental Sciences, University of Basel, Basel, Switzerland.
Christian FeregrinoZoology, Department of Environmental Sciences, University of Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0003-0300-5483
Maëva LuxeyZoology, Department of Environmental Sciences, University of Basel, Basel, Switzerland.
Chloé MoreauZoology, Department of Environmental Sciences, University of Basel, Basel, Switzerland.
Sabrina FischerZoology, Department of Environmental Sciences, University of Basel, Basel, Switzerland.
Antoine FagesZoology, Department of Environmental Sciences, University of Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0001-6985-4360
Danilo RitzProteomics Core Facility, Biozentrum, University of Basel, Basel, Switzerland.ORCID http://orcid.org/0009-0004-8603-9754
Patrick TschoppZoology, Department of Environmental Sciences, University of Basel, Basel, Switzerland. patrick.tschopp@unibas.ch.ORCID http://orcid.org/0000-0001-7339-3990

Funding

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 310030_189242
6 · The paper itself

Abstract

Cell type repertoires have expanded extensively in metazoan animals, with some clade-specific cells being crucial to evolutionary success. A prime example are the skeletogenic cells of vertebrates. Depending on anatomical location, these cells originate from three different precursor lineages, yet they converge developmentally towards similar cellular phenotypes. Furthermore, their 'skeletogenic competency' arose at distinct evolutionary timepoints, thus questioning to what extent different skeletal body parts rely on truly homologous cell types. Here, we investigate how lineage-specific molecular properties are integrated at the gene regulatory level, to allow for skeletogenic cell fate convergence. Using single-cell functional genomics, we find that distinct transcription factor profiles are inherited from the three precursor states and incorporated at lineage-specific enhancer elements. This lineage-specific regulatory logic suggests that these regionalized skeletogenic cells are distinct cell types, rendering them amenable to individualized selection, to define adaptive morphologies and biomaterial properties in different parts of the vertebrate skeleton.

Indexed as

Cell LineageEmbryonic DevelopmentGene Expression Regulation, DevelopmentalVertebratesAnimalsCell DifferentiationEnhancer Elements, GeneticMiceOsteogenesisSingle-Cell AnalysisTranscription FactorsTranscription Factors

Identifiers

PMID40038298
PMCPMC11880379

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.