Evidence map›Paper›PMID 40038270›Full record

ArticleNature communications2025

Computation-aided designs enable developing auxotrophic metabolic sensors for wide-range glyoxylate and glycolate detection.

Enrico Orsi, Helena Schulz-Mirbach, Charles A R Cotton, Ari Satanowski, Henrik M Petri, Susanne L Arnold, Natalia Grabarczyk, Rutger Verbakel, Karsten S Jensen, Stefano Donati and 12 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Enrico Orsi *The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark. enricoo@biosustain.dtu.dk.ORCID http://orcid.org/0000-0002-4741-0344
Helena Schulz-Mirbach *Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0000-0002-5376-9185
Charles A R CottonMax Planck Institute of Molecular Plant Physiology, Potsdam, Germany.
Ari SatanowskiMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0000-0003-0775-4799
Henrik M PetriMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0009-0003-1147-4826
Susanne L ArnoldMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.
Natalia GrabarczykThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark.
Rutger VerbakelThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark.
Karsten S JensenThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark.
Stefano DonatiThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark.ORCID http://orcid.org/0000-0001-9946-0346
Nicole PacziaMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0000-0003-3859-8186
Timo GlatterMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0000-0001-8716-8516
Andreas M KüffnerMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.
Tanguy ChotelMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.
Farah SchillmüllerMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.
Alberto De MariaThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark.ORCID http://orcid.org/0000-0001-6618-3442
Hai HeMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0000-0003-1223-2813
Steffen N LindnerMax Planck Institute of Molecular Plant Physiology, Potsdam, Germany.ORCID http://orcid.org/0000-0003-3226-3043
Elad NoorDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0001-8776-4799
Arren Bar-EvenMax Planck Institute of Molecular Plant Physiology, Potsdam, Germany.ORCID http://orcid.org/0000-0002-1039-4328
Tobias J ErbMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0000-0003-3685-0894
Pablo I NikelThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark. pabnik@biosustain.dtu.dk.ORCID http://orcid.org/0000-0002-9313-7481

Funding

EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 101065339Novo Nordisk Fonden (Novo Nordisk Foundation) NNF10CC1016517Novo Nordisk Fonden (Novo Nordisk Foundation) NNF18CC0033664Novo Nordisk Fonden (Novo Nordisk Foundation) NNF20CC0035580Novo Nordisk Fonden (Novo Nordisk Foundation) NNF23OC0083631
6 · The paper itself

Abstract

Auxotrophic metabolic sensors (AMS) are microbial strains modified so that biomass formation correlates with the availability of specific metabolites. These sensors are essential for bioengineering (e.g., in growth-coupled designs) but creating them is often a time-consuming and low-throughput process that can be streamlined by in silico analysis. Here, we present a systematic workflow for designing, implementing, and testing versatile AMS based on Escherichia coli. Glyoxylate, a key metabolite in (synthetic) CO

Indexed as

Biosensing TechniquesComputer-Aided DesignEscherichia coliGlycolatesGlyoxylatesBiomassMetabolic EngineeringMetabolic Networks and PathwaysModels, BiologicalGlycolatesglycolic acidGlyoxylatesglyoxylic acid

Identifiers

PMID40038270
PMCPMC11880463

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.