Evidence map›Paper›PMID 40037355›Full record

ArticleMolecular cell2025

YTHDC1 cooperates with the THO complex to prevent RNA-damage-induced DNA breaks.

Ning Tsao, Patrick M Lombardi, Ajin Park, Jennifer Olabode, Rebecca Rodell, Hua Sun, Shilpa Padmanaban, Joshua R Brickner, Miaw-Sheue Tsai, Elizabeth A Pollina and 2 more

Abstract read
In one paragraph

Article in Molecular cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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  10. The role of m5C, m1A and m7G modifications in tumors of urinary system.Frontiers in cell and developmental biology · 2025
    Review
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  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Ning TsaoDepartment of Pathology & Immunology, Center for Genome Integrity, Washington University School of Medicine, St. Louis, MO 63110, USA.
Patrick M LombardiDepartment of Science, Mount St. Mary's University, Emmitsburg, MD 21727, USA.
Ajin ParkDepartment of Cell Biology and Physiology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Jennifer OlabodeDepartment of Pathology & Immunology, Center for Genome Integrity, Washington University School of Medicine, St. Louis, MO 63110, USA.
Rebecca RodellDepartment of Pathology & Immunology, Center for Genome Integrity, Washington University School of Medicine, St. Louis, MO 63110, USA.
Hua SunDepartment of Pathology & Immunology, Center for Genome Integrity, Washington University School of Medicine, St. Louis, MO 63110, USA.
Shilpa PadmanabanDepartment of Developmental Biology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Joshua R BricknerDepartment of Pathology & Immunology, Center for Genome Integrity, Washington University School of Medicine, St. Louis, MO 63110, USA.
Miaw-Sheue TsaiBiological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Elizabeth A PollinaDepartment of Developmental Biology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Chun-Kan ChenDepartment of Cell Biology and Physiology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Nima MosammaparastDepartment of Pathology & Immunology, Center for Genome Integrity, Washington University School of Medicine, St. Louis, MO 63110, USA. Electronic address: nima@wustl.edu.

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI WALTER J. CHAZIN · 2001 to 2026
$89.6M
MECHANISM AND REGULATION OF THE DNA ALKYLATION DAMAGE RESPONSER01CA193318 · NCI · WASHINGTON UNIVERSITY · PI MOSAMMAPARAST, NIMA · 2015 to 2024
$3.6M
A SIGNALING PATHWAY SPECIFIC FOR ALKYLATION DAMAGER01CA227001 · NCI · WASHINGTON UNIVERSITY · PI MOSAMMAPARAST, NIMA · 2018 to 2022
$1.8M
An RNA-Dependent Innate Immune Response Pathway to Base-Damaging ChemotherapeuticsR01CA282733 · NCI · WASHINGTON UNIVERSITY · PI Nima Mosammaparast · 2024 to 2026
$1.5M
Determining the structural basis of polyubiquitin signaling in response to DNA alkylation damageR15GM140410 · NIGMS · MOUNT ST. MARY'S UNIVERSITY · PI LOMBARDI, PATRICK · 2020 to 2024
$980k
RNA damage induced DNA breaks: A new mechanism of genome instabilityR01GM160854 · NIGMS · WASHINGTON UNIVERSITY · PI MOSAMMAPARAST, NIMA · 2025 to 2025
$855k
Systematic identification of RNA sequences and protein components regulating circular RNA translationR00HG011475 · NHGRI · WASHINGTON UNIVERSITY · PI CHEN, CHUN-KAN · 2023 to 2025
$734k
Mechanisms of translational output control in pancreatic cancerK99CA255936 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI HAUSMANN, SIMONE CHRISTINE · 2021 to 2022
$224k
NCI NIH HHS K99 CA255936NCI NIH HHS P01 CA092584NCI NIH HHS R01 CA193318NCI NIH HHS R01 CA227001NCI NIH HHS R01 CA282733NHGRI NIH HHS R00 HG011475NIGMS NIH HHS R01 GM160854NIGMS NIH HHS R15 GM140410
6 · The paper itself

Abstract

Certain environmental toxins and chemotherapeutics are nucleic acid-damaging agents, causing adducts in DNA and RNA. While most of these adducts occur in RNA, the consequences of RNA damage are largely unexplored. Here, we demonstrate that nuclear RNA damage can result in loss of genome integrity in human cells. Specifically, we show that YTHDC1 regulates alkylation damage responses with the THO complex (THOC). In addition to its established binding to N6-methyladenosine (m

Indexed as

Nerve Tissue ProteinsRNARNA-Binding ProteinsRNA Splicing FactorsAdenosineDNA-Binding ProteinsDNA DamageDNA RepairHEK293 CellsHumansMethyltransferasesNuclear ProteinsR-Loop StructuresAdenosineDNA-Binding ProteinsMethyltransferasesNerve Tissue ProteinsN-methyladenosineNuclear ProteinsRNARNA-Binding ProteinsRNA Splicing FactorsYTHDC1 protein, humanalkylationbase damageR-loopsRNAYTH domain

Identifiers

PMID40037355
PMCPMC12009005

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.