Evidence map›Paper›PMID 40035753›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Effects of binding partners on thermal reversion rates of photoswitchable molecules.

P Maximilian M Reed, Jaewan Jang, Ryan M Woloschuk, Jakeb Reis, Jacques I C Hille, Maruti Uppalapati, G Andrew Woolley

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

P Maximilian M ReedDepartment of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada.ORCID 0009-0002-9526-8650
Jaewan JangDepartment of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada.
Ryan M WoloschukDepartment of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada.
Jakeb ReisDepartment of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada.
Jacques I C HilleDepartment of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada.
Maruti UppalapatiDepartment of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada.ORCID 0000-0003-0101-2030
G Andrew WoolleyDepartment of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada.ORCID 0000-0002-3446-2639

Funding

Canadian Government | NSERC | RES'EAU-WaterNET RGPIN-2023-04733
6 · The paper itself

Abstract

The binding of photoswitchable molecules to partners forms the basis of many naturally occurring light-dependent signaling pathways and various photopharmacological and optogenetic tools. A critical parameter affecting the function of these molecules is the thermal half-life of the light state. Reports in the literature indicate that, in some cases, a binding partner can significantly influence the thermal half-life, while in other cases it has no effect. Here, we present a unifying framework for quantitatively analyzing the effects of binding partners on thermal reversion rates. We focus on photoswitchable protein/binder interactions involving LOV domains, photoactive yellow protein, and CBCR GAF domains with partners that bind either the light or the dark state of the photoswitchable domain. We show that the effect of a binding partner depends on the extent to which the transition state for reversion resembles the dark state or the light state. We quantify this resemblance with a ϕ

Indexed as

Bacterial ProteinsPhotoreceptors, MicrobialKineticsLightProtein BindingProtein DomainsBacterial Proteinsphotoactive yellow protein, BacteriaPhotoreceptors, Microbialoptogeneticsprotein engineeringprotein folding

Identifiers

PMID40035753
PMCPMC11912449

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.