Evidence map›Paper›PMID 40035364›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2025

Conformational Profile of Galactose-α-1,3-Galactose (α-Gal) and Structural Basis of Its Immunological Response.

Golokesh Santra, Dimitrios A Pantazis

Abstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Golokesh SantraMax-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470, Mülheim an der Ruhr, Germany.ORCID https://orcid.org/0000-0002-7297-8767
Dimitrios A PantazisMax-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470, Mülheim an der Ruhr, Germany.ORCID https://orcid.org/0000-0002-2146-9065

Funding

Max-Planck-Gesellschaft
6 · The paper itself

Abstract

Small carbohydrates present a rich and complex conformational landscape whose accurate description is a significant challenge for computational molecular science, yet essential for understanding their physicochemical properties, biological roles, and medical implications. Galactose-α-1,3-galactose (α-Gal) is a notable example of a disaccharide that remains insufficiently characterized despite being implicated in the life-threatening anaphylactic response known as alpha-Gal syndrome. Here we present a thorough conformational analysis of α-Gal using a unique combination of techniques, ranging from classical dynamics to a staged automatic conformer generation and screening using a quantum-mechanics-based protocol elaborated in the present work. The results reveal a remarkably constrained and rigid conformational profile that is minimally responsive to solvation. Subsequently, we study the binding of α-Gal to the M86 antibody using multiscale hybrid (QM/MM) calculations. Quantum mechanical analysis of the binding in terms of non-covalent interactions, local energy decomposition, and quantities derived from the quantum theory of atoms in molecules, enable us to identify and quantify the key interactions that form the structural basis of α-Gal's immunological response.

Indexed as

DisaccharidesGalactoseCarbohydrate ConformationHumansMolecular ConformationMolecular Dynamics SimulationQuantum TheoryThermodynamicsDisaccharidesGalactosealpha-gal syndromeanaphylaxisconformational analysisdisaccharidesmolecular dynamics

Identifiers

PMID40035364
PMCPMC12015390

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.