Evidence map›Paper›PMID 40033358›Full record

ArticleBMC research notes2025

A dataset for machine learning-based QSAR models establishment to screen beta-lactamase inhibitors using the FARM -BIOMOL chemical library.

Thanet Pitakbut, Jennifer Munkert, Wenhui Xi, Yanjie Wei, Gregor Fuhrmann

Abstract read
In one paragraph

Article in BMC research notes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Thanet PitakbutDepartment of Biology, Pharmaceutical Biology, Friedrich-Alexander-Universität Erlangen-Nürnberg, Staudtstr. 5, 91058, Erlangen, Germany. thanet.pitakbut@fau.de.
Jennifer MunkertDepartment of Biology, Pharmaceutical Biology, Friedrich-Alexander-Universität Erlangen-Nürnberg, Staudtstr. 5, 91058, Erlangen, Germany.
Wenhui XiShenzhen Key Laboratory of Intelligent Bioinformatics and Center for High-Performance Computing, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China.
Yanjie WeiShenzhen Key Laboratory of Intelligent Bioinformatics and Center for High-Performance Computing, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China.
Gregor FuhrmannDepartment of Biology, Pharmaceutical Biology, Friedrich-Alexander-Universität Erlangen-Nürnberg, Staudtstr. 5, 91058, Erlangen, Germany. gregor.fuhrmann@fau.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesBeta-lactamase is a bacterial enzyme that deactivates beta-lactam antibiotics, and it is one of the leading causes of antibiotic resistance problems globally. In current drug discovery research, molecular simulation, like molecular docking, has been routinely integrated to virtually screen an enzyme inhibitory effect. However, a commonly known limitation of molecular docking is a low percent success rate. Previously, we reported a proof-of-concept of combining machine learning with a quantitative structure-activity relationship (QSAR) model that overcame this limitation ( https://doi.org/10.1186/s13065-024-01324-x ). Here, we presented and navigated the dataset used in our previous report, including sixty trained models (thirty for random forest and another thirty for logistic regression). DATA DESCRIPTION: This data note has three essential parts. The first part is an in vitro beta-lactamase inhibitory screening of eighty-nine bioactive molecules. The second part consisted of three molecular docking approaches (AutoDock Vina, DOCK6, and consensus docking). The last part is machine learning integrated with QSAR models. Therefore, this data note is vital for further model development to increase performance.

Indexed as

beta-Lactamase Inhibitorsbeta-LactamasesDatabases, ChemicalMachine LearningQuantitative Structure-Activity RelationshipSmall Molecule LibrariesMolecular Docking Simulationbeta-Lactamase Inhibitorsbeta-LactamasesSmall Molecule LibrariesAnd QSARAutoDock vinaConsensus dockingDOCK6Logistic regressionMachine learningMolecular dockingPhysio-chemical descriptorsRandom forest

Identifiers

PMID40033358
PMCPMC11877915

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.