Evidence map›Paper›PMID 40033150›Full record

ArticleNature structural & molecular biology2025

ZBTB16/PLZF regulates juvenile spermatogonial stem cell development through an extensive transcription factor poising network.

Chongil Yi, Yuka Kitamura, So Maezawa, Satoshi H Namekawa, Bradley R Cairns

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Exploration of Novel Markers in Tan Sheep Spermatogenesis.Animals : an open access journal from MDPI · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Genome-Wide Association Studies in Japanese Quails of the FInternational journal of molecular sciences · 2025
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Chongil YiHoward Hughes Medical Institute, Huntsman Cancer Institute, Department of Oncological Sciences, University of Utah School of Medicine, Salt Lake City, UT, USA.ORCID http://orcid.org/0000-0002-1121-1570
Yuka KitamuraDepartment of Microbiology and Molecular Genetics, University of California, Davis, CA, USA.ORCID http://orcid.org/0009-0001-7403-0902
So MaezawaDepartment of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Chiba, Japan.ORCID http://orcid.org/0000-0002-9060-2042
Satoshi H NamekawaDepartment of Microbiology and Molecular Genetics, University of California, Davis, CA, USA.ORCID http://orcid.org/0000-0002-1052-943X
Bradley R CairnsHoward Hughes Medical Institute, Huntsman Cancer Institute, Department of Oncological Sciences, University of Utah School of Medicine, Salt Lake City, UT, USA. brad.cairns@hci.utah.edu.ORCID http://orcid.org/0000-0002-9864-8811

Funding

Epigenetic gene regulations in the germlineR35GM141085 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Satoshi Namekawa · 2021 to 2026
$4.4M
Molecular, Epigenetic and Genomic Approaches to Understand Mechanisms of Aging in the Human TestisR01AG069725 · NIA · UNIVERSITY OF UTAH · PI CAIRNS, BRADLEY R. · 2020 to 2024
$1.9M
Amnis ImageStreamX MarkII Imaging Flow CytometerS10OD026959 · OD · UNIVERSITY OF UTAH · PI MARVIN, JAMES E · 2020 to 2020
$517k
NCRR Confocal ProposalS10RR024761 · NCRR · UNIVERSITY OF UTAH · PI RODESCH, CHRISTOPHER K · 2008 to 2008
$475k
Howard Hughes Medical InstituteNCRR NIH HHS S10 RR024761NIA NIH HHS R01 AG069725NIGMS NIH HHS R35 GM141085NIH HHS S10 OD026959
6 · The paper itself

Abstract

Spermatogonial stem cells balance self-renewal with differentiation and spermatogenesis to ensure continuous sperm production. Here, we identify roles for the transcription factor zinc finger and BTB domain-containing protein 16 (ZBTB16; also known as promyelocytic leukemia zinc finger (PLZF)) in juvenile mouse undifferentiated spermatogonia (uSPG) in promoting self-renewal and cell-cycle progression to maintain uSPG and transit-amplifying states. Notably, ZBTB16, Spalt-like transcription factor 4 (SALL4) and SRY-box transcription factor 3 (SOX3) colocalize at over 12,000 promoters regulating uSPG and meiosis. These regions largely share broad histone 3 methylation and acetylation (H3K4me3 and H3K27ac), DNA hypomethylation, RNA polymerase II (RNAPol2) and often CCCTC-binding factor (CTCF). Hi-C analyses show robust three-dimensional physical interactions among these cobound promoters, suggesting the existence of a transcription factor and higher-order active chromatin interaction network within uSPG that poises meiotic promoters for subsequent activation. Conversely, these factors do not notably occupy germline-specific promoters driving spermiogenesis, which instead lack promoter-promoter physical interactions and bear DNA hypermethylation, even when active. Overall, ZBTB16 promotes uSPG cell-cycle progression and colocalizes with SALL4, SOX3, CTCF and RNAPol2 to help establish an extensive and interactive chromatin poising network.

Indexed as

Adult Germline Stem CellsPromyelocytic Leukemia Zinc Finger ProteinSpermatogoniaAnimalsCell DifferentiationDNA-Binding ProteinsDNA MethylationHistonesMaleMeiosisMicePromoter Regions, GeneticSOXB1 Transcription FactorsSpermatogenesisTranscription FactorsDNA-Binding ProteinsHistonesPromyelocytic Leukemia Zinc Finger ProteinSall4 protein, mouseSox3 protein, mouseSOXB1 Transcription FactorsTranscription FactorsZbtb16 protein, mouse

Identifiers

PMID40033150
PMCPMC12263333

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.