Evidence map›Paper›PMID 40029601›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2025

Functional Single-Cell Proteomics: Technology and Biological Applications.

Pin-Rui Su, Miao-Ping Chien

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Pin-Rui SuDepartment of Chemistry, National Taiwan University, Taipei, Taiwan.
Miao-Ping ChienDepartment of Molecular Genetics, Erasmus University Medical Center, Rotterdam, The Netherlands. m.p.chien@erasmusmc.nl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Single-cell proteomics has the potential to decipher tumor heterogeneity, and methods such as Single-Cell ProtEomics by Mass Spectrometry (SCoPE-MS) allow profiling of several tens of single cells for more than 1,000 proteins per cell. Our laboratory has advanced state-of-the-art single-cell proteomics technology to enable linking proteomes of individual cells with phenotypes of interest. Here, we describe a microscopy-based functional single-cell proteomic profiling technology, called FUNpro, designed for general use in cultured cell lines. FUNpro enables high-throughput, real-time live-cell screening, identification, and isolation of single cells of interest, even when the phenotypes are dynamic or the cells are rare. This chapter outlines a generalized protocol for functional single-cell proteomic profiling and analysis of a standard cancer cell line, including an overview of the microscopy, cell culture, image analysis, photolabeling of cells of interest, fluorescence-activated cell sorting (FACS), and the single-cell proteomics procedures and analyses employed.

Indexed as

ProteomeProteomicsSingle-Cell AnalysisCell Culture TechniquesCell Line, TumorFlow CytometryHumansMass SpectrometryProteomeMicroscopyPhenotype-to-proteome linkingPhotolabelingSCoPE-MSSingle-cell proteomics

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.