Evidence map›Paper›PMID 40029522›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2025

A Systems Biology Approach of Quantifying Signal Transduction to B-Cell Proliferation and Differentiation.

Koushik Roy, Aimilia Vareli, Simon Mitchell

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Koushik RoyDivision of Microbiology and Immunology, Department of Pathology, University of Utah, Salt Lake City, UT, USA. koushik.roy@path.utah.edu.
Aimilia VareliDepartment of Clinical and Experimental Medicine, Brighton and Sussex Medical School, Brighton, UK.
Simon MitchellDepartment of Clinical and Experimental Medicine, Brighton and Sussex Medical School, Brighton, UK. S.A.Mitchell@bsms.ac.uk.

Funding

Role of the NFkB signaling network in generating memory B cell and long-lived plasma cellR56AI177789 · NIAID · UNIVERSITY OF UTAH · PI ROY, KOUSHIK · 2024 to 2024
$298k
NIAID NIH HHS R56 AI177789
6 · The paper itself

Abstract

Combining mathematical modeling with experiments enables quantitative understanding of cell signaling, transcriptional regulation, and cell fate decisions. Here, we provide a systems biology approach to link signal transduction with B cells fate decisions, to enable quantitative prediction of B-cell proliferation, and differentiation. We describe methodology to run simulations that reveal how signal transduction regulates gene expression and predicts cell fate decision. We describe how to quantitively validate modeling predictions with wet-lab experiments.

Indexed as

B-LymphocytesCell DifferentiationSignal TransductionSystems BiologyAnimalsCell ProliferationComputer SimulationGene Expression RegulationHumansModels, BiologicalB cellCell SignalingMathematical ModelingPlasma CellProliferation

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.