Evidence map›Paper›PMID 40029181›Full record

ArticleThe journal of physical chemistry. A2025

The "Bubblepole" (BUPO) Method for Linear-Scaling Coulomb Matrix Construction with or without Density Fitting.

Frank Neese, Pauline Colinet, Bernardo DeSouza, Benjamin Helmich-Paris, Frank Wennmohs, Ute Becker

Abstract read
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Article in The journal of physical chemistry. A, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Formulation of an EfficientJournal of chemical theory and computation · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Frank NeeseDepartment of Molecular Theory and Spectroscopy, Max-Planck-Institut für Kohlenforschung, D-45470 Mülheim an der Ruhr, Germany.ORCID 0000-0003-4691-0547
Pauline ColinetDepartment of Molecular Theory and Spectroscopy, Max-Planck-Institut für Kohlenforschung, D-45470 Mülheim an der Ruhr, Germany.
Bernardo DeSouzaFAccTs GmbH, Rolandstraße 67, 50667 Köln, Germany.
Benjamin Helmich-ParisDepartment of Molecular Theory and Spectroscopy, Max-Planck-Institut für Kohlenforschung, D-45470 Mülheim an der Ruhr, Germany.ORCID 0000-0002-3616-9671
Frank WennmohsDepartment of Molecular Theory and Spectroscopy, Max-Planck-Institut für Kohlenforschung, D-45470 Mülheim an der Ruhr, Germany.
Ute BeckerDepartment of Molecular Theory and Spectroscopy, Max-Planck-Institut für Kohlenforschung, D-45470 Mülheim an der Ruhr, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this work, we describe the development of a new algorithm for the computation of Coulomb-type matrices using the well-known resolution of the identity (RI) or density fitting (DF) approximation. The method is linear-scaling with respect to system size and computationally highly efficient. For small molecules, it performs almost as well as the Split-RI-J algorithm (which might be the most efficient RI-J implementation to date), while outperforming it for larger systems with about 300 or more atoms. The method achieves linear scaling through multipole approximations and a hierarchical treatment of multipoles. However, unlike in the fast multipole method (FMM), the algorithm does not use a hierarchical boxing algorithm. Rather, close-lying objects like auxiliary basis shells and basis set shell pairs are grouped together in spheres that enclose the set of objects completely, which includes a new definition of the shell-pair extent that defines a real-space radius outside of which a given shell pair can be safely assumed to be negligible. We refer to these spheres as "bubbles" and therefore refer to the algorithm as the "Bubblepole" (BUPO) algorithm, with the acronym being RI-BUPO-J. The bubbles are constructed in a way to contain a nearly constant number of objects such that a very even workload arises. The hierarchical bubble structure adapts itself to the molecular topology and geometry. For any target object (shell pair or auxiliary shell), one might envision that the bubbles "carve" out what might be referred to as a "far-field surface". Using the default settings determined in this work, we demonstrate that the algorithm reaches submicro-Eh and even nano-Eh accuracy in the total Coulomb energy for systems as large as 700 atoms and 7000 basis functions. The largest calculations performed (the crambin protein solvated by 500 explicit water molecules in a triple-ζ basis) featured more than 2000 atoms and more than 33,000 basis functions.

Identifiers

PMID40029181
PMCPMC11912483

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.