Evidence map›Paper›PMID 40028357›Full record

ArticleACS central science2025

A Collagen Triple Helix without the Superhelical Twist.

Mark A B Kreutzberger, Le Tracy Yu, Thi H Bui, Maria C Hancu, Michael D Purdy, Tomasz Osinski, Peter M Kasson, Edward H Egelman, Jeffrey D Hartgerink

Abstract read
In one paragraph

Article in ACS central science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. De Novo Design of Specific Heterotrimeric Collagen-Like Peptides via Genetic Algorithm.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  7. Around the collagen triple helix: an introduction to studying associated genetic and acquired diseases.Matrix biology : journal of the International Society for Matrix Biology · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Mark A B KreutzbergerDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, Virginia 22903, United States.
Le Tracy YuDepartment of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005, United States.ORCID https://orcid.org/0000-0001-9904-6460
Thi H BuiDepartment of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005, United States.
Maria C HancuDepartment of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005, United States.
Michael D PurdyMolecular Electron Microscopy Core, University of Virginia School of Medicine, Charlottesville, Virginia 22903, United States.
Tomasz OsinskiCenter for Advanced Research Computing, University of Southern California, Los Angeles, California 90089, United States.
Peter M KassonDepartments of Chemistry & Biochemistry and Biomedical Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Edward H EgelmanDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, Virginia 22903, United States.ORCID https://orcid.org/0000-0003-4844-5212
Jeffrey D HartgerinkDepartment of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005, United States.ORCID https://orcid.org/0000-0002-3186-5395

Funding

Cryo-EM of Helical Protein and Nucleoprotein Polymers at Near Atomic ResolutionR35GM122510 · NIGMS · UNIVERSITY OF VIRGINIA · PI EDWARD H. EGELMAN · 2017 to 2026
$7.3M
Simulation-guided spectroscopy and refinement of heterogenous conformational ensemblesR01GM138444 · NIGMS · UNIVERSITY OF VIRGINIA · PI KASSON, PETER M · 2021 to 2024
$1.4M
NIGMS NIH HHS R01 GM138444NIGMS NIH HHS R35 GM122510
6 · The paper itself

Abstract

Collagens are ubiquitous in biology: functioning as the backbone of the extracellular matrix, forming the primary structural components of key immune system complexes, and fulfilling numerous other structural roles in a variety of systems. Despite this, there is limited understanding of how triple helices, the basic collagen structural units, pack into collagenous assemblies. Here we use a peptide self-assembly system to design collagenous assemblies based on the C1q collagen-like region. Using cryo-EM we solved a structure of one assembly to 3.5 Å resolution and built an atomic model. From this, we identify a triple helix conformation with no superhelical twist, starkly in contrast to the canonical right-handed triple helix. This nontwisting region allows for unique hydroxyproline stacking between adjacent triple helices and also results in the formation of an exposed cavity with rings of hydrophobic amino acids packed symmetrically. We find no precedent for such an arrangement of collagen triple helices and designed assemblies with substituted amino acids in various locations to probe key stabilizing amino acid interactions in the complex. The stability of these altered complexes behaves as predicted by our atomic model. Our findings, combined with the extremely limited experimental structural data on triple helix packing in the literature, suggest that collagen and collagen-like assemblies may adopt a far more varied conformational landscape than previously appreciated. We hypothesize that this is particularly likely in packed assemblies of triple helices, adjacent to the termini of these helices and at discontinuities in the required Xaa-Yaa-Gly repeating primary sequence, a discontinuity found in the majority of this class of proteins and in many collagen-associated diseases.

Identifiers

PMID40028357
PMCPMC11869133

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.