Evidence map›Paper›PMID 40027650›Full record

ArticlebioRxiv : the preprint server for biology2025

Engineering Plasmids with Synthetic Origins of Replication.

Baiyang Liu, Xiao Peng, Matthew R Bennett, Matthew R Lakin, James Chappell

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Baiyang LiuGraduate Program in Systems, Synthetic, and Physical Biology, Rice University, Houston, 77005, TX, USA.ORCID 0000-0002-8672-5146
Xiao PengGraduate Program in Systems, Synthetic, and Physical Biology, Rice University, Houston, 77005, TX, USA.ORCID 0000-0001-5111-1673
Matthew R BennettDepartment of Biosciences, Rice University, Houston, 77005, TX, USA.ORCID 0000-0002-4975-8854
Matthew R LakinDepartment of Computer Science, University of New Mexico, Albuquerque, 87106, NM, USA.
James ChappellDepartment of Biosciences, Rice University, Houston, 77005, TX, USA.ORCID 0000-0001-7367-1524

Funding

Dynamics and pattern formation in differentiating cellular populationsR01GM144959 · NIGMS · RICE UNIVERSITY · PI BENNETT, MATTHEW R. · 2021 to 2024
$1.2M
NIGMS NIH HHS R01 GM144959
6 · The paper itself

Abstract

Plasmids remain by far the most common medium for delivering engineered DNA to microorganisms. However, the reliance on natural plasmid replication mechanisms limits their tunability, compatibility, and modularity. Here we refactor the natural pMB1 origin and create plasmids with customizable copy numbers by tuning refactored components. We then create compatible origins that use synthetic RNA regulators to implement independent copy control. We further demonstrate that the synthetic origin of replication (SynORI) can be engineered modularly to respond to various signals, allowing for multiplexed copy-based reporting of environmental signals. Lastly, a library of 6 orthogonal SynORI plasmids is created and co-maintained in E. coli for a week. This work establishes the feasibility of creating plasmids with SynORI that can serve as a new biotechnology for synthetic biology.

Identifiers

PMID40027650
PMCPMC11870631

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.