Evidence map›Paper›PMID 40027616›Full record

ArticlebioRxiv : the preprint server for biology2025

ESMStabP: A Regression Model for Protein Thermostability Prediction.

Marcus Ramos, Robert L Jernigan, Mesih Kilinc

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Marcus RamosIowa State University, Ames, IA 50011, United States.
Robert L JerniganIowa State University, Ames, IA 50011, United States.ORCID 0000-0003-0996-8360
Mesih KilincIowa State University, Ames, IA 50011, United States.

Funding

Novel Use of Genome Information to Understand MutationsR01HG012117 · NHGRI · IOWA STATE UNIVERSITY · PI JERNIGAN, ROBERT L, KLOCZKOWSKI, ANDRZEJ · 2021 to 2025
$2.3M
An effective statistical inference framework to develop innovative compensations for protein mutationsR01GM157600 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Zhao Ren · 2024 to 2026
$611k
NHGRI NIH HHS R01 HG012117NIGMS NIH HHS R01 GM157600
6 · The paper itself

Abstract

Accurately predicting protein thermostability is crucial for numerous applications in biotechnology, pharmaceuticals, and food science. Experimental methods for determining protein melting temperatures are often time-consuming and costly, driving the need for efficient computational alternatives. In this paper, we introduce ESMStabP, an enhanced regression model for predicting protein thermostability. To improve model performance and generalizability, we assembled a significantly larger dataset by combining and cleaning datasets previously utilized in other thermostability models. Building on DeepStabP, ESMStabP incorporates significant improvements, using embeddings from the ESM2 protein language model and thermophilic classifications. The predictions from ESMStabP outperform DeepStabP and other existing predictors, achieving an R

Identifiers

PMID40027616
PMCPMC11870573

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.