Evidence map›Paper›PMID 40024889›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2025

Synthesis of Derivatives of the Antibiotic Albicidin: The N-Terminal Fragment as Key to Control Potency and Resistance Mediated by the Binding Protein AlbA.

Marcel Kulike-Koczula, Kay Hommernick, Leela B Ghimire, Simone Kosol, Lieby Zborovsky, Maria Seidel, Nicole Sattler, Andi Mainz, John B Weston, Dmitry Ghilarov and 1 more

Abstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Marcel Kulike-KoczulaInstitut für Organische Chemie, Technische Universität Berlin, Straße des 17. Juni 124, 10623, Berlin, Germany.ORCID https://orcid.org/0009-0008-8967-6571
Kay HommernickInstitut für Organische Chemie, Technische Universität Berlin, Straße des 17. Juni 124, 10623, Berlin, Germany.
Leela B GhimireDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, NR4 7UH, Norwich, UK.ORCID https://orcid.org/0009-0006-7026-6308
Simone KosolInstitut für Organische Chemie, Technische Universität Berlin, Straße des 17. Juni 124, 10623, Berlin, Germany.ORCID https://orcid.org/0000-0001-7913-4818
Lieby ZborovskyInstitut für Organische Chemie, Technische Universität Berlin, Straße des 17. Juni 124, 10623, Berlin, Germany.ORCID https://orcid.org/0000-0001-6730-8569
Maria SeidelInstitut für Organische Chemie, Technische Universität Berlin, Straße des 17. Juni 124, 10623, Berlin, Germany.
Nicole SattlerInstitut für Organische Chemie, Technische Universität Berlin, Straße des 17. Juni 124, 10623, Berlin, Germany.
Andi MainzInstitut für Organische Chemie, Technische Universität Berlin, Straße des 17. Juni 124, 10623, Berlin, Germany.ORCID https://orcid.org/0000-0003-3428-864X
John B WestonInstitut für Organische Chemie, Technische Universität Berlin, Straße des 17. Juni 124, 10623, Berlin, Germany.
Dmitry GhilarovDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, NR4 7UH, Norwich, UK.ORCID https://orcid.org/0000-0001-9325-3207
Roderich D SüssmuthInstitut für Organische Chemie, Technische Universität Berlin, Straße des 17. Juni 124, 10623, Berlin, Germany.ORCID https://orcid.org/0000-0001-7027-2069

Funding

Alexander-von-Humboldt-FoundationBiotechnology and Biological Sciences Research Council BB/X01097X/1Bundesministerium für Bildung und Forschung 03VP00030Deutsche Forschungsgemeinschaft RTG 2473Deutsche Forschungsgemeinschaft SU239/18-1Elsa-Neumann Stipendium T70011Wellcome TrustWellcome Trust 221868/Z/20/Z
6 · The paper itself

Abstract

The peptide albicidin represents a highly promising lead structure which is a first-in-class antibiotic with remarkable potency against gram-negative bacteria. Past efforts in the synthesis of albicidin analogs focused on increasing hydrophilicity, broadening of the antibacterial profile and overcoming resistance. Herein, we present synthetic albicidin derivatives with variations in the N-terminal building block and characterize their antibacterial activity and DNA gyrase inhibition. Furthermore, we show that the N-terminus of albicidin greatly affects binding to the resistance factor AlbAL. This transcription regulator senses albicidin and triggers the biosynthesis of the binding protein AlbAS, thus reducing the free concentration of the antibiotic. Here we demonstrate uncoupling of the binding event from transcription activation for some derivatives, and even a few derivatives seemed insensitive to sequestration by AlbA. This approach could be a strategy to develop albicidin analogs escaping AlbA resistance.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsDNA GyraseDrug Resistance, BacterialMicrobial Sensitivity TestsOrganic ChemicalsProtein BindingTopoisomerase II InhibitorsXanthomonasalbicidinAnti-Bacterial AgentsBacterial ProteinsDNA GyraseOrganic ChemicalsTopoisomerase II InhibitorsAntibioticsAntimicrobial resistanceBiological activityDrug discoveryStructure-activity relationships

Identifiers

PMID40024889
PMCPMC11979685

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.