Evidence map›Paper›PMID 40021987›Full record

ArticleBMC microbiology2025

Nitrogen metabolism of the highly ureolytic bacterium Proteus penneri S99 isolated from the rumen.

Sijia Liu, Nan Zheng, Jiaqi Wang, Shengguo Zhao

Abstract read
In one paragraph

Article in BMC microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Construction of RecombinantMicroorganisms · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sijia LiuState Key Laboratory of Animal Nutrition and Feeding, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Haidian, Beijing, 100193, China.
Nan ZhengState Key Laboratory of Animal Nutrition and Feeding, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Haidian, Beijing, 100193, China.
Jiaqi WangState Key Laboratory of Animal Nutrition and Feeding, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Haidian, Beijing, 100193, China. jiaqiwang@vip.163.com.
Shengguo ZhaoState Key Laboratory of Animal Nutrition and Feeding, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Haidian, Beijing, 100193, China. zhaoshengguo1984@163.com.

Funding

National Key R&D Program of China 2022YFD1301000State Key Laboratory of Animal Nutrition and Feeding 2004DA125184G2108the Agricultural Science and Technology Innovation Program CAAS-ZDRW202304
6 · The paper itself

Abstract

backgroundThe model rumen-dominant ureolytic bacterium P. penneri S99 exhibits high urease activity. It was cultivated using ammonia, urea, amino acids, or their combination as nitrogen sources. To identify differences in gene expression, the transcript abundances of various genes involved in nitrogen metabolism were analyzed by harvesting mRNA from cells during the exponential growth phases on different nitrogen sources.

resultsP. penneri S99 can utilize ammonia, urea, or amino acids as the sole nitrogen sources for growth and shows a preference for utilizing urea. It exhibits similar growth rates and maximum biomass on ammonia and urea, but showed higher growth rates and maximum biomass on amino acids. Transcriptome sequencing analysis revealed different transcription patterns in response to different nitrogen sources. The urease gene expression was detected in all three different nitrogen sources, and complete hydrolysis of urea was also observed when other nitrogen sources were added to the medium containing urea. The regulation of urease in P. penneri S99 was characterized by constitutive expression, not by urea. The growth of P. penneri S99 on ammonia, ammonium acid, and urea was similar, with the only observed difference being an increase in urease transcript abundance.

conclusionsThe transcription patterns of nitrogen metabolism genes offer insights into how nitrogen is utilized in the rumen.

Indexed as

NitrogenProteusRumenAmino AcidsAmmoniaAnimalsBacterial ProteinsGene Expression ProfilingGene Expression Regulation, BacterialUreaUreaseAmino AcidsAmmoniaBacterial ProteinsNitrogenUreaUreaseAmmonia assimilationProteus penneri S99RumenTranscriptomeUrease

Identifiers

PMID40021987
PMCPMC11869435

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.