Evidence map›Paper›PMID 40021703›Full record

ArticleScientific reports2025

Gene expression associated with endocrine therapy resistance in estrogen receptor-positive breast cancer.

Veronica Jones, Hongwei Holly Yin, Yate-Ching Yuan, Yongzhe Wang, Sierra Min Li, Dana Aljaber, Angelica Sanchez, Christine Quinones, Dan Schmolze, Yuan Yuan and 15 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Cancer diagnosis & prognosis
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Veronica JonesDepartment of Surgery, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA. vjones@coh.org.
Hongwei Holly YinDepartment of High Throughput Screening, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Yate-Ching YuanDepartment of Computational Quantitative Medicine, Beckman Research Institute, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Yongzhe WangDepartment of Surgery, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Sierra Min LiDepartment of Biostatistics, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Dana AljaberUniversity of California, Davis School of Medicine, Davis, CA, USA.
Angelica SanchezDepartment of Population Sciences, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Christine QuinonesDepartment of Surgery, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Dan SchmolzeDepartment of Pathology, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Yuan YuanDepartment of Medical Oncology, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
Joanne MortimerDepartment of Medical Oncology and Therapeutics Research, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Lisa YeeDepartment of Surgery, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Laura KruperDepartment of Surgery, Moffitt Cancer Center, Tampa, FL, USA.
Tijana Jovanovic-TalismanDepartment of Cancer Biology and Molecular Medicine, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Jerneja TomsicDepartment of Population Sciences, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Nancy SanchezDepartment of Population Sciences, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Tanya ChavezUniversity of California, San Diego, CA, USA.
Ruth M O'ReganDepartment of Medicine, University of Rochester, 125 Red Creek Dr, Rochester, NY, 14623, USA.
Qamar J KhanDepartment of Medicine, University of Kansas, 3901 Rainbow Boulevard, Kansas City, KS, 66160, USA.
Melissa DavisInstitute of Translational Genomic , Morehouse School of Medicine, Medicine, Morehouse College720 Westview Drive SW, Atlanta, GA, 30310, USA.
Kevin KalinskyDepartment of Hematology and Medical Oncology, Emory University, 1365-C Clifton Road NE, Atlanta, GA, 30322, USA.
Jane MeiselDepartment of Hematology and Medical Oncology, Emory University, 1365-C Clifton Road NE, Atlanta, GA, 30322, USA.
Rick KittlesOffice of Research Affairs, Morehouse College, Morehouse School of Medicine, 720 Westview Drive SW, Atlanta, GA, 30310, USA.
Lorna Rodriguez-RodriguezDepartment of Surgery, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Victoria SeewaldtDepartment of Population Sciences, City of Hope, 1500 E Duarte Rd, Duarte, CA, 91010, USA.

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI John Charles Williams · 1985 to 2026
$86.3M
Oncology Research Career Development ProgramK12CA001727 · NCI · CITY OF HOPE NATIONAL MEDICAL CENTER · PI MORTIMER, JOANNE E. · 1992 to 2024
$14.6M
Project 2U54CA285116 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI ERNEST MARTINEZ, Victoria L. Seewaldt · 2023 to 2026
$6.8M
Research EducationU54CA285114 · NCI · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI ERNEST MARTINEZ · 2023 to 2026
$6.2M
The DARC side of Breast Cancer Disparities - African Ancestry and Cancer- Related Immune ResponseR01CA259396 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI DAVIS, MELISSA B, YATES, CLAYTON · 2021 to 2025
$2.4M
2/2 Drug Development and Capacity Building: A UCR/CoH-CCC Partnership (Pilot Project 2)P20CA242620 · NCI · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI MARTINEZ, ERNEST · 2019 to 2022
$1.2M
Project 2P20CA242619 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI SEEWALDT, VICTORIA L. · 2019 to 2022
$937k
NCI NIH HHS K12 CA001727NCI NIH HHS P20 CA242619NCI NIH HHS P20 CA242620NCI NIH HHS P30 CA033572NCI NIH HHS R01 CA259396NCI NIH HHS U54 CA285114NCI NIH HHS U54 CA285116NIMHD NIH HHS L60 MD011128
6 · The paper itself

Abstract

Despite endocrine therapy (ET), approximately 20-40% of Stage I-III estrogen receptor-positive breast cancer (ER + BC) patients experience recurrence. Recurrence while on ET is indicative of ET resistance. This study aimed to identify differentially expressed genes (DEGs) associated with recurrence during ET (ET resistance) and to explore gene expression differences across PAM50 molecular subtypes. Eighty tumor specimens from 79 patients treated at the City of Hope Comprehensive Cancer Center (2012-2016) were analyzed using NanoString technology. Fourteen patients (17.7%) experienced recurrence over a median follow-up of 68 months (range 35-104 months). Key upregulated DEGs in the recurrence group included EZH2 (log2 fold change[log2FC]: 0.67, p = 0.0017), WNT11 (log2FC: 1.08, p = 0.0088), ITGB6 (log2FC: 0.80, p = 0.0312), and TOP2A (log2FC: 0.79, p = 0.0381). Downregulated DEGs included SNAI2 (log2FC: - 0.63, p = 0.0055), ITPR1 (log2FC: - 0.75, p = 0.0083), CD10 (log2FC: - 0.70, p = 0.0092), PTEN (log2FC: - 0.29, p = 0.0163), VRD (log2FC: - 0.46, p = 0.0184), and WNT5A (log2FC: - 0.76, p = 0.0272). EZH2 and TOP2A were positively correlated with proliferation scores, while WNT11 and ITGB6 emerged as potential biomarkers independently associated with recurrence. These findings suggest novel biomarker candidates that could help overcome ET resistance, reduce recurrence, and improve outcomes in ER + BC.

Indexed as

Antineoplastic Agents, HormonalBreast NeoplasmsDrug Resistance, NeoplasmGene Expression Regulation, NeoplasticReceptors, EstrogenAdultAgedBiomarkers, TumorEnhancer of Zeste Homolog 2 ProteinFemaleGene Expression ProfilingHumansMiddle AgedNeoplasm Recurrence, LocalAntineoplastic Agents, HormonalBiomarkers, TumorEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanReceptors, Estrogen

Identifiers

PMID40021703
PMCPMC11871144

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.