ArticleScientific data2025
An annotated haplotype-resolved genome sequence assembly of diploid German chamomile, Matricaria chamomilla.
Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Matricaria chamomilla L. (chamomile) is a medicinal plant that is widely used for treating skin infections and respiratory ailments. Chamomile belongs to the Asteraceae family of flowering plants and is a primarily outcrossing species with a heterozygous genome. Despite its extensive use, no reference genome has been available for chamomile until now. We present a chromosome-level genome sequence for chamomile which was assembled with TRITEX pipeline from PacBio accurate long reads and chromosome conformation capture sequencing data. The assembled pseudo-haploid genome has a total size of 2.75 Gb, organized into 9 chromosomes with a scaffold N50 of 285 Mb. This high-quality reference genome has a BUSCO value of 98.8% and includes 47,820 functional genes. Additionally, we assembled a haplotype-resolved genome, taking advantage of the high heterozygosity of chamomile. The haplotype assemblies have total sizes of 2.28 Gb and 2.34 Gb and cover 87.6% and 89.8% of the pseudo-haploid reference genome, respectively. Our assemblies provide a valuable resource for genetics and genomics works for chamomile and related members of the Asteraceae.
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