Evidence map›Paper›PMID 40021131›Full record

ArticleJournal of chemical theory and computation2025

Method to Compute the Interaction Energy of a Molecule in Ground and Excited States with a Discrete Environment: The Case of Uracil in Water.

Claudio Amovilli, Franca Maria Floris

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

2 authors.

Claudio AmovilliDipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Giuseppe Moruzzi 13, 56124 Pisa, Italy.ORCID 0000-0001-8024-6972
Franca Maria FlorisDipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Giuseppe Moruzzi 13, 56124 Pisa, Italy.ORCID 0000-0001-7838-8031

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this work, we present a method that is able to compute the interaction energy of a system of interest, in the ground or excited state, with an arbitrary number of water molecules representing the environment. As a test case, we take uracil. We considered five clusters containing 1, 12, 24, 26, and 37 water molecules. The method is a first step toward a more general approach to determining the interaction energy between a molecule, treated at a high level of theory, and a complex molecular environment that can be described as an explicit solvent model. Ground and excited electronic states of uracil were optimized in free space at the variational quantum Monte Carlo (QMC) level. In this way, we sampled electronic configurations that are used to compute all the contributions to the interaction energy with the environment. Excitation energies from the ground state were computed at the diffusion Monte Carlo (DMC) level. Numerical results are in agreement with available literature data on the solvatochromic effect on the

Identifiers

PMID40021131
PMCPMC11912188

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.