Evidence map›Paper›PMID 40020069›Full record

ArticleScience advances2025

TFIIH kinase CDK7 drives cell proliferation through a common core transcription factor network.

Taylor Jones, Junjie Feng, Olivia Luyties, Kira Cozzolino, Lynn Sanford, Jenna K Rimel, Christopher C Ebmeier, Grace S Shelby, Lotte P Watts, Jessica Rodino and 20 more

Erratum issuedAbstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Targeting CDKs in the RNAPII transcription cycle.Nature reviews. Drug discovery · 2026
    Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors.

Taylor JonesDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.ORCID 0000-0002-8591-2847
Junjie FengInstitute for Cancer Research, Chester Beatty Laboratories, 237 Fulham Road, London SW3 6JB, UK.ORCID 0009-0001-5861-2742
Olivia LuytiesDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.ORCID 0000-0002-3806-9340
Kira CozzolinoDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Lynn SanfordDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, CO 80303, USA.
Jenna K RimelDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Christopher C EbmeierDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.ORCID 0000-0001-7940-6190
Grace S ShelbyDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Lotte P WattsDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.ORCID 0000-0002-1364-4345
Jessica RodinoDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.ORCID 0009-0009-6935-4441
Nisha RajagopalSyros Pharmaceuticals, Cambridge, MA 02140, USA.
Shanhu HuSyros Pharmaceuticals, Cambridge, MA 02140, USA.
Finn BrennanDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.ORCID 0009-0008-7459-686X
Zachary L MaasDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, CO 80303, USA.ORCID 0009-0008-5645-2811
Sydney AlnemySyros Pharmaceuticals, Cambridge, MA 02140, USA.
William F RichterDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.ORCID 0000-0003-4469-6428
Adrian F KohMaterials and Structural Analysis Division, Thermo Fisher Scientific, Achtseweg Noord 5, 5651 Eindhoven, Netherlands.ORCID 0000-0001-6682-4449
Nora B CroninLondon Consortium for High-Resolution Cryo-EM, The Francis Crick Institute, London NW1 1AT, UK.ORCID 0000-0002-4249-7313
Ameya MadduriSyros Pharmaceuticals, Cambridge, MA 02140, USA.ORCID 0009-0009-4857-5122
Jhuma DasSyros Pharmaceuticals, Cambridge, MA 02140, USA.
Elliot CooperSyros Pharmaceuticals, Cambridge, MA 02140, USA.
Kristin B HammanSyros Pharmaceuticals, Cambridge, MA 02140, USA.ORCID 0009-0000-9188-5307
John P CarulliSyros Pharmaceuticals, Cambridge, MA 02140, USA.ORCID 0000-0001-9959-597X
Mary A AllenDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, CO 80303, USA.ORCID 0000-0001-7490-0165
Sabrina SpencerDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.ORCID 0000-0002-5798-3007
Abhay KotechaMaterials and Structural Analysis Division, Thermo Fisher Scientific, Achtseweg Noord 5, 5651 Eindhoven, Netherlands.ORCID 0000-0002-4480-5439
Jason J MarineauSyros Pharmaceuticals, Cambridge, MA 02140, USA.ORCID 0000-0002-4321-0038
Basil J GreberInstitute for Cancer Research, Chester Beatty Laboratories, 237 Fulham Road, London SW3 6JB, UK.ORCID 0000-0001-9379-7159
Robin D DowellDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, CO 80303, USA.ORCID 0000-0001-7665-9985
Dylan J TaatjesDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.ORCID 0000-0003-4444-5688

Funding

Predoctoral Training Molecular BiophysicsT32GM065103 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI FALKE, JOSEPH J · 2002 to 2021
$4.3M
Supplemental request for MAX-TL Ultracentrifuge and rotorR35GM139550 · NIGMS · UNIVERSITY OF COLORADO · PI Dylan J Taatjes · 2021 to 2026
$3.8M
A Technique for Measuring Transcription Factor ActivityR01GM125871 · NIGMS · UNIVERSITY OF COLORADO · PI DOWELL-DEEN, ROBIN DEANNE · 2018 to 2021
$1.6M
How do CDK7 and CDK9 regulate Pol II initiation and pausing?F31CA254478 · NCI · UNIVERSITY OF COLORADO · PI LUYTIES, OLIVIA CARON · 2020 to 2022
$115k
Mechanisms of the TFIIH-associated kinase CDK7 in p53-dependent transcriptional regulationF31CA250432 · NCI · UNIVERSITY OF COLORADO · PI RIMEL, JENNA KATHLEEN · 2020 to 2021
$72k
NCI NIH HHS F31 CA250432NCI NIH HHS F31 CA254478NIGMS NIH HHS R01 GM125871NIGMS NIH HHS R35 GM139550NIGMS NIH HHS T32 GM065103Wellcome Trust
6 · The paper itself

Abstract

How cyclin-dependent kinase 7 (CDK7) coordinately regulates the cell cycle and RNA polymerase II transcription remains unclear. Here, high-resolution cryo-electron microscopy revealed how two clinically relevant inhibitors block CDK7 function. In cells, CDK7 inhibition rapidly suppressed transcription, but constitutively active genes were disproportionately affected versus stimulus-responsive. Distinct transcription factors (TFs) regulate constitutive versus stimulus-responsive genes. Accordingly, stimulus-responsive TFs were refractory to CDK7 inhibition whereas constitutively active "core" TFs were repressed. Core TFs (n = 78) are predominantly promoter associated and control cell cycle and proliferative gene expression programs across cell types. Mechanistically, rapid suppression of core TF function can occur through CDK7-dependent phosphorylation changes in core TFs and RB1. Moreover, CDK7 inhibition depleted core TF protein levels within hours, consistent with durable target gene suppression. Thus, a major but unappreciated biological function for CDK7 is regulation of a TF cohort that drives proliferation, revealing an apparent universal mechanism by which CDK7 coordinates RNAPII transcription with cell cycle CDK regulation.

Indexed as

Cell ProliferationCyclin-Dependent KinasesGene Regulatory NetworksTranscription FactorsTranscription Factor TFIIHCell CycleCryoelectron MicroscopyCyclin-Dependent Kinase-Activating KinaseGene Expression RegulationHumansPhosphorylationTranscription, GeneticCDK7 protein, humanCyclin-Dependent Kinase-Activating KinaseCyclin-Dependent KinasesTranscription FactorsTranscription Factor TFIIH

Identifiers

PMID40020069
PMCPMC11870056

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.