Evidence map›Paper›PMID 40016525›Full record

ArticleNature immunology2025

Autophagy repression by antigen and cytokines shapes mitochondrial, migration and effector machinery in CD8 T cells.

Linda V Sinclair, Tom Youdale, Laura Spinelli, Milica Gakovic, Alistair J Langlands, Shalini Pathak, Andrew J M Howden, Ian G Ganley, Doreen A Cantrell

Erratum issuedAbstract read
In one paragraph

Article in Nature immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Aberrant immune regulation and enrichment of stem-like CD8bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Tissue-resident memory CD8Nature reviews. Gastroenterology & hepatology · 2025
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Linda V Sinclair *Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK. L.V.Sinclair@dundee.ac.uk.ORCID http://orcid.org/0000-0003-1248-7189
Tom Youdale *Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK.
Laura SpinelliDivision of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0002-5801-6297
Milica GakovicDivision of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK.
Alistair J LanglandsNational Phenotypic Screening Centre, School of Life Sciences, University of Dundee, Dundee, UK.ORCID http://orcid.org/0009-0001-6675-2745
Shalini PathakDivision of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK.
Andrew J M HowdenDivision of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0002-4332-9469
Ian G GanleyMRC PPU, School of Life Sciences, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0003-1481-9407
Doreen A CantrellDivision of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK. D.A.Cantrell@dundee.ac.uk.ORCID http://orcid.org/0000-0001-7525-3350

Funding

RCUK | Medical Research Council (MRC) MR/N013735/1Wellcome TrustWellcome Trust (Wellcome) 202950/Z/16/ZWellcome Trust (Wellcome) 205023/Z/16/ZWellcome Trust (Wellcome) 227383/Z/23/Z
6 · The paper itself

Abstract

Autophagy shapes CD8 T cell fate; yet the timing, triggers and targets of this process are poorly defined. Herein, we show that naive CD8 T cells have high autophagic flux, and we identify an autophagy checkpoint whereby antigen receptor engagement and inflammatory cytokines acutely repress autophagy by regulating amino acid transporter expression and intracellular amino acid delivery. Activated T cells with high levels of amino acid transporters have low autophagic flux in amino-acid-replete conditions but rapidly reinduce autophagy when amino acids are restricted. A census of proteins degraded and fueled by autophagy shows how autophagy shapes CD8 T cell proteomes. In cytotoxic T cells, dominant autophagy substrates include cytolytic effector molecules, and amino acid and glucose transporters. In naive T cells, mitophagy dominates and selective mitochondrial pruning supports the expression of molecules that coordinate T cell migration and survival. Autophagy thus differentially prunes naive and effector T cell proteomes and is dynamically repressed by antigen receptors and inflammatory cytokines to shape T cell differentiation.

Indexed as

AntigensAutophagyCD8-Positive T-LymphocytesCytokinesMitochondriaAnimalsCell DifferentiationCell MovementLymphocyte ActivationMiceMice, Inbred C57BLMitophagyProteomeReceptors, Antigen, T-CellAntigensCytokinesProteomeReceptors, Antigen, T-Cell

Identifiers

PMID40016525
PMCPMC11876071

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.