Evidence map›Paper›PMID 40016375›Full record

ArticleCommunications biology2025

Discovery of a distinct type of methylenetetrahydrofolate reductase family that couples with tetrahydrofolate-dependent demethylases.

HongYang Yu, Naofumi Kamimura, Ryo Kato, Michelle Jane Genoveso, Miki Senda, Eiji Masai, Toshiya Senda

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

HongYang YuStructural Biology Research Center, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki, Japan.
Naofumi KamimuraDepartment of Materials Science and Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata, Japan.ORCID http://orcid.org/0000-0002-8792-1675
Ryo KatoDepartment of Materials Science and Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata, Japan.ORCID http://orcid.org/0000-0003-1478-6625
Michelle Jane GenovesoStructural Biology Research Center, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki, Japan.
Miki SendaStructural Biology Research Center, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki, Japan.ORCID http://orcid.org/0000-0003-3863-4503
Eiji MasaiDepartment of Materials Science and Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata, Japan.ORCID http://orcid.org/0000-0001-9194-7483
Toshiya SendaStructural Biology Research Center, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki, Japan. toshiya.senda@kek.jp.ORCID http://orcid.org/0000-0002-5153-928X

Funding

Japan Agency for Medical Research and Development (AMED) JP24ama121001MEXT | Japan Science and Technology Agency (JST) JPMJPF2104
6 · The paper itself

Abstract

Methylenetetrahydrofolate reductase (MTHFR) is a key enzyme in one-carbon (1C) metabolism, catalyzing the reduction of methylenetetrahydrofolate to methyltetrahydrofolate. Interestingly, Sphingobium lignivorans SYK-6, a model bacterium for the catabolism of lignin-derived aromatic compounds, possesses a unique MTHFR (S6MTHFR) that catalyzes the reverse reaction of typical MTHFRs-namely, the oxidation of methyltetrahydrofolate. However, no direct evidence supports this function. Here, we show that S6MTHFR catalyzes the oxidation of methyltetrahydrofolate and elucidate the molecular mechanism underlying the unique enzymatic properties of S6MTHFR based on its crystal structure. Furthermore, a database search reveals that a group of bacteria, including S. lignivorans SYK-6, utilize tetrahydrofolate-dependent demethylases to produce methyltetrahydrofolate, which is subsequently oxidized by an S6MTHFR-type enzyme. We propose that the combination of a demethylase with an S6MTHFR-type enzyme represents a distinct type of 1C metabolism that may regulate methionine biosynthesis.

Indexed as

Bacterial ProteinsMethylenetetrahydrofolate Reductase (NADPH2)SphingomonadaceaeTetrahydrofolatesOxidation-Reduction5-methyltetrahydrofolateBacterial ProteinsMethylenetetrahydrofolate Reductase (NADPH2)Tetrahydrofolates

Identifiers

PMID40016375
PMCPMC11868366

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.