Evidence map›Paper›PMID 40016327›Full record

ArticleScientific reports2025

Heterogeneous model for superdiffusive movement of dense core vesicles in C. elegans.

Anna Gavrilova, Nickolay Korabel, Victoria J Allan, Sergei Fedotov

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Anna GavrilovaSchool of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, The Michael Smith Building, Rumford St, Manchester, M13 9PT, UK.
Nickolay KorabelDepartment of Mathematics, Faculty of Science and Engineering, The University of Manchester, Manchester, M13 9PL, UK.
Victoria J AllanSchool of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, The Michael Smith Building, Rumford St, Manchester, M13 9PT, UK.
Sergei FedotovDepartment of Mathematics, Faculty of Science and Engineering, The University of Manchester, Manchester, M13 9PL, UK. sergei.fedotov@manchester.ac.uk.

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Engineering and Physical Sciences Research Council EP/V008641/1NIH HHS P40 OD010440Wellcome TrustWellcome Trust 108867/Z/15/Z
6 · The paper itself

Abstract

Transport of dense core vesicles (DCVs) in neurons is crucial for distributing molecules like neuropeptides and growth factors. We studied the experimental trajectories of dynein-driven directed movement of DCVs in the ALA neuron in C. elegans over a duration of up to 6 seconds. We analysed the DCV movement in three strains of C. elegans: (1) with normal kinesin-1 function, (2) with reduced function in kinesin light chain 2 (KLC-2), and (3) a null mutation in kinesin light chain 1 (KLC-1). We find that DCVs move superdiffusively with displacement variance [Formula: see text] in all three strains with low reversal rates and frequent immobilization of DCVs. The distribution of DCV displacements fits a beta-binomial distribution with the mean and the variance following linear and quadratic growth patterns, respectively. We propose a simple heterogeneous random walk model to explain the observed superdiffusive retrograde transport behaviour of DCV movement. This model involves a random probability with the beta density for a DCV to resume its movement or remain in the same position. To validate our model further, we measure the first passage time for a DCV to reach a certain threshold for the first time. According to the model, the first passage time distribution should follow a beta-negative binomial distribution with the same parameters as the DCV displacement distributions. Our experimental data confirm this prediction.

Indexed as

Caenorhabditis elegansModels, BiologicalSecretory VesiclesAnimalsBiological TransportCaenorhabditis elegans ProteinsDyneinsKinesinsMovementNeuronsCaenorhabditis elegans ProteinsDyneinsKinesinsBeta-binomial distributionDense-core vesiclesHeterogeneous anomalous diffusion

Identifiers

PMID40016327
PMCPMC11868511

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.