Evidence map›Paper›PMID 40016305›Full record

ArticleScientific reports2025

Metatranscriptomic identification of novel RNA viruses from raccoon dog (Nyctereutes procyonoides) feces in Japan.

Mami Oba, Shoichi Sakaguchi, Natsuko Teshima, Tomoko Yokota, Hitoshi Takemae, Mao Tohei, Fumie Shimokawa, Masaru Murakami, Shuntaro Mizuno, Hiroho Ishida and 5 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. First description ofInternational journal for parasitology. Parasites and wildlife · 2025
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Mami ObaCenter for Infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.
Shoichi SakaguchiDepartment of Microbiology and Infection Control, Faculty of Medicine, Osaka Medical and Pharmaceutical University, Takatsuki, Osaka, 569-8686, Japan.
Natsuko TeshimaCenter for Infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.
Tomoko YokotaCenter for Infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.
Hitoshi TakemaeCenter for Infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.
Mao ToheiSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan.
Fumie ShimokawaSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan.
Masaru MurakamiSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan.
Shuntaro MizunoSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan.
Hiroho IshidaSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan.
Hironobu MurakamiSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan.
Tomomi TakanoSchool of Veterinary Medicine, Kitasato University, Towada, Aomori, 034-8628, Japan.
Tetsuya MizutaniCenter for Infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.
Hideharu TsukadaSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan. h-tsukada@azabu-u.ac.jp.ORCID http://orcid.org/0000-0002-9830-8075
Makoto NagaiCenter for Infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan. m-nagai@azabu-u.ac.jp.ORCID http://orcid.org/0000-0001-5884-620X

Funding

JSPS KAKENHI 21K05947
6 · The paper itself

Abstract

The raccoon dog (Nyctereutes procyonoides), classified in the order Carnivora within the family Canidae, is native to East Asia and widely distributed throughout Japan due to its adaptability to various environments. Despite the close relationship between raccoon dogs and other animals, viruses infecting raccoon dogs have not been thoroughly investigated in Japan. In this study, we performed metatranscriptomic analyses using fecal samples collected from latrines of wild raccoon dogs in two locations on mainland Japan. Nearly complete viral genomes were identified, including viruses belonging to the genus Kobuvirus (CaKoV), an unclassified canine sapelovirus within the subfamily Ensavirinae (CaSaV), the Genius Mamastrovirus (CaAstV), unclassified hepe-astro-like virus (bastrovirus-like) (Bast-like V), and an unclassified dicistrovirus (DiciV) within the family Dicistroviridae. Phylogenetic analyses revealed that raccoon dog CaKoV, CaSaV, and CaAstV are related to canine strains but form independent clusters specific to raccoon dogs, suggesting they have evolved within this host population. Bast-like V, detected for the first time in raccoon dogs, showed high sequence identity with viruses previously identified in Chinese shrews. The shared insectivorous nature of these hosts and in silico host range predictions suggest that Bast-like Vs may originate from arthropod viruses. Although DiciV is likely of dietary origin due to its arthropod hosts, the large number of sequence reads detected and the phylogenetic clustering of raccoon dog DiciVs with mammalian DiciVs indicate the need to assess their potential infectivity in mammals and the risk of spillover. These findings suggest that raccoon dogs harbor endemic viruses within the canine population and may act as potential vectors for viruses with unknown infectivity in mammals but with spillover risk.

Indexed as

FecesRaccoon DogsRNA VirusesTranscriptomeAnimalsDogsGenome, ViralJapanPhylogenyFecal virusesInvertebrate-related virusesMetatranscriptomic analysisSpillover risk potentialWild raccoon dog

Identifiers

PMID40016305
PMCPMC11868605

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.