ArticleScientific data2025
A telomere-to-telomere genome assembly of the protandrous hermaphrodite blackhead seabream, Acanthopagrus schlegelii.
Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed.
- Gap-free telomere-to-telomere genome assembly of stone flounder (Kareius bicoloratus).Scientific data · 2026Article
- The pangenome ofiScience · 2026Article
- A telomere-to-telomere gap-free genome assembly of the protandrous maroon clownfish (Premnas biaculeatus).Scientific data · 2026Article
- Gap-Free T2T assemblies of Micropterus salmoides identify a Y-Linked SV hotspot underlying sexual dimorphism.BMC genomics · 2025Article
- A telomere-to-telomere gap-free genome assembly of the protandrous hermaphrodite Asian seabass (Lates calcarifer).Scientific data · 2025Article
- Genome-Wide Identification of DNA Methyltransferases (Dnmts) in Fish and Its Potential Roles During Sex Change in Blackhead Seabream.Biomolecules · 2025Article
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Authors and funding
8 authors.
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Abstract
A remarkable life cycle of the protandrous blackhead seabream (Acanthopagrus schlegelii), initiating as a male during the first two years and then naturally transforming to a female since the third year, makes this fish a valuable model for studying molecular mechanisms of sex change. Here, we constructed a gap-free telomere-to-telomere (T2T) genome assembly for a male blackhead seabream, by integration of PacBio HiFi, Ultra-long ONT and Hi-C sequencing techniques. With 97.87% of the entire sequences anchored into 24 chromosomes, this haplotypic genome assembly spans 714.98 Mb. In terms of correctness (quality value QV: 52.95) and completeness (BUSCO score: 99.9%), this chromosome-scale assembly is indeed of high quality. It has been annotated with 24,581 protein-coding genes, and predicted with low percentage (30.95%) of repetitive sequences. As the first reference T2T-level genome assembly of various protandrous fishes, it provides a valuable genetic resource for expansion of fish genomics database. It will also allow for in-depth genomic comparisons among diverse hermaphrodite vertebrates, as well as offer fundamental genome data to support extensive research on blackhead seabream.
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