ArticleNature communications2025
Domesticated rice alters the rhizosphere microbiome, reducing nitrogen fixation and increasing nitrous oxide emissions.
Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed.
- Wild rice locus enables microbiome re-domestication for enhanced nitrogen-use efficiency.Nature microbiology · 2026Article
- Engineered diazotrophs with host-inducible nitrogen supply systems: Transforming rice farming through innovative nitrogen biofertilizers.Journal of integrative plant biology · 2026Review
- Review
- Harnessing plant-exuded prebiotics as a next-generation strategy for sustainable agriculture.Journal of integrative plant biology · 2026Review
- Evaluation of combined root exudate and rhizosphere microbiota sampling approaches to elucidate plant-soil-microbe interactions.The New phytologist · 2026Article
- The crayfish-rice coculture model contributes to regulating the soil fertility of rice fields and maintaining the stability of soil microbial community composition and function.Advanced biotechnology · 2026Article
- Article
- Root-Zone Nitrogen Fertilization Increases Oilseed Rape Yield: Reprogramming Rhizosphere N-Cycling and Strengthening Soil-Plant Coupling.Plants (Basel, Switzerland) · 2026Article
- Microbiome eco-evolution of cultivated and wild rice species across the genus Oryza and its importance in supporting rice growth.Microbiome · 2026Article
- Scion varieties and nitrogen levels affect carbon and nitrogen assimilation in apple via modulating rhizosphere microbial structure and function.Horticulture research · 2026Article
- Advancing Plant Microbiome Research Through Host DNA Depletion Techniques.Plant biotechnology journal · 2026Review
- The application ofMicrobiology spectrum · 2026Article
- Microbiome-inspired solutions to save human and planetary health.Frontiers in microbiology · 2026Review
- A novel internal reference microorganism-based method reveals wild-enrichedFrontiers in microbiology · 2026Article
- Prediction of soil probiotics based on foundation model representation enhancement and stacked aggregation classifier.Briefings in bioinformatics · 2025Article
- The role of plant host genetics in shaping the composition and functionality of rhizosphere microbiomes.mSystems · 2025Review
- Blueprints for sustainable plant production through the utilization of crop wild relatives and their microbiomes.Nature communications · 2025Review
Corrections and comments
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Authors and funding
21 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Crop domestication has revolutionized food production but increased agriculture's reliance on fertilizers and pesticides. We investigate differences in the rhizosphere microbiome functions of wild and domesticated rice, focusing on nitrogen (N) cycling genes. Shotgun metagenomics and real-time PCR reveal a higher abundance of N-fixing genes in the wild rice rhizosphere microbiomes. Validation through transplanting rhizosphere microbiome suspensions shows the highest nitrogenase activity in soils with wild rice suspensions, regardless of planted rice type. Domesticated rice, however, exhibits an increased number of genes associated with nitrous oxide (N
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